FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7435, 140 aa
  1>>>pF1KB7435 140 - 140 aa - 140 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9461+/-0.000715; mu= 12.5874+/- 0.043
 mean_var=52.4569+/-10.389, 0's: 0 Z-trim(107.7): 15  B-trim: 49 in 1/49
 Lambda= 0.177081
 statistics sampled from 9741 (9744) to 9741 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.701), E-opt: 0.2 (0.299), width:  16
 Scan time:  1.800

The best scores are:                                      opt bits E(32554)
CCDS42266.1 ZSWIM7 gene_id:125150|Hs108|chr17      ( 140)  884 233.2   4e-62


>>CCDS42266.1 ZSWIM7 gene_id:125150|Hs108|chr17           (140 aa)
 initn: 884 init1: 884 opt: 884  Z-score: 1228.8  bits: 233.2 E(32554): 4e-62
Smith-Waterman score: 884; 100.0% identity (100.0% similar) in 140 aa overlap (1-140:1-140)

               10        20        30        40        50        60
pF1KB7 MAVVLPAVVEELLSEMAAAVQESARIPDEYLLSLKFLFGSSATQALDLVDRQSITLISSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MAVVLPAVVEELLSEMAAAVQESARIPDEYLLSLKFLFGSSATQALDLVDRQSITLISSP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 SGRRVYQVLGSSSKTYTCLASCHYCSCPAFAFSVLRKSDSILCKHLLAVYLSQVMRTCQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 SGRRVYQVLGSSSKTYTCLASCHYCSCPAFAFSVLRKSDSILCKHLLAVYLSQVMRTCQQ
               70        80        90       100       110       120

              130       140
pF1KB7 LSVSDKQLTDILLMEKKQEA
       ::::::::::::::::::::
CCDS42 LSVSDKQLTDILLMEKKQEA
              130       140




140 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 07:46:29 2016 done: Fri Nov  4 07:46:30 2016
 Total Scan time:  1.800 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]