FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7435, 140 aa
  1>>>pF1KB7435 140 - 140 aa - 140 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2272+/-0.000328; mu= 10.9240+/- 0.020
 mean_var=52.5762+/-10.377, 0's: 0 Z-trim(114.6): 14  B-trim: 120 in 1/50
 Lambda= 0.176880
 statistics sampled from 24487 (24491) to 24487 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.689), E-opt: 0.2 (0.287), width:  16
 Scan time:  4.970

The best scores are:                                      opt bits E(85289)
NP_001036162 (OMIM: 614535) zinc finger SWIM domai ( 140)  884 233.1 1.1e-61
NP_001036163 (OMIM: 614535) zinc finger SWIM domai ( 140)  884 233.1 1.1e-61


>>NP_001036162 (OMIM: 614535) zinc finger SWIM domain-co  (140 aa)
 initn: 884 init1: 884 opt: 884  Z-score: 1228.2  bits: 233.1 E(85289): 1.1e-61
Smith-Waterman score: 884; 100.0% identity (100.0% similar) in 140 aa overlap (1-140:1-140)

               10        20        30        40        50        60
pF1KB7 MAVVLPAVVEELLSEMAAAVQESARIPDEYLLSLKFLFGSSATQALDLVDRQSITLISSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAVVLPAVVEELLSEMAAAVQESARIPDEYLLSLKFLFGSSATQALDLVDRQSITLISSP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 SGRRVYQVLGSSSKTYTCLASCHYCSCPAFAFSVLRKSDSILCKHLLAVYLSQVMRTCQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SGRRVYQVLGSSSKTYTCLASCHYCSCPAFAFSVLRKSDSILCKHLLAVYLSQVMRTCQQ
               70        80        90       100       110       120

              130       140
pF1KB7 LSVSDKQLTDILLMEKKQEA
       ::::::::::::::::::::
NP_001 LSVSDKQLTDILLMEKKQEA
              130       140

>>NP_001036163 (OMIM: 614535) zinc finger SWIM domain-co  (140 aa)
 initn: 884 init1: 884 opt: 884  Z-score: 1228.2  bits: 233.1 E(85289): 1.1e-61
Smith-Waterman score: 884; 100.0% identity (100.0% similar) in 140 aa overlap (1-140:1-140)

               10        20        30        40        50        60
pF1KB7 MAVVLPAVVEELLSEMAAAVQESARIPDEYLLSLKFLFGSSATQALDLVDRQSITLISSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAVVLPAVVEELLSEMAAAVQESARIPDEYLLSLKFLFGSSATQALDLVDRQSITLISSP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 SGRRVYQVLGSSSKTYTCLASCHYCSCPAFAFSVLRKSDSILCKHLLAVYLSQVMRTCQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SGRRVYQVLGSSSKTYTCLASCHYCSCPAFAFSVLRKSDSILCKHLLAVYLSQVMRTCQQ
               70        80        90       100       110       120

              130       140
pF1KB7 LSVSDKQLTDILLMEKKQEA
       ::::::::::::::::::::
NP_001 LSVSDKQLTDILLMEKKQEA
              130       140




140 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 07:46:30 2016 done: Fri Nov  4 07:46:31 2016
 Total Scan time:  4.970 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]