FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7436, 147 aa
  1>>>pF1KB7436 147 - 147 aa - 147 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2369+/-0.000625; mu= 11.3504+/- 0.038
 mean_var=54.9344+/-11.068, 0's: 0 Z-trim(110.1): 10  B-trim: 0 in 0/50
 Lambda= 0.173042
 statistics sampled from 11349 (11352) to 11349 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.741), E-opt: 0.2 (0.349), width:  16
 Scan time:  1.690

The best scores are:                                      opt bits E(32554)
CCDS14799.1 PRY gene_id:9081|Hs108|chrY            ( 147) 1016 261.0 1.9e-70
CCDS35482.1 PRY2 gene_id:442862|Hs108|chrY         ( 147) 1016 261.0 1.9e-70


>>CCDS14799.1 PRY gene_id:9081|Hs108|chrY                 (147 aa)
 initn: 1016 init1: 1016 opt: 1016  Z-score: 1378.4  bits: 261.0 E(32554): 1.9e-70
Smith-Waterman score: 1016; 100.0% identity (100.0% similar) in 147 aa overlap (1-147:1-147)

               10        20        30        40        50        60
pF1KB7 MGATGLGFLLSWRQDNLNGTDCQGCNILYFSETTGSMCSELSLNRGLEARRKKDLKDSFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MGATGLGFLLSWRQDNLNGTDCQGCNILYFSETTGSMCSELSLNRGLEARRKKDLKDSFL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 WRYGKVGCISLPLREMTAWINPPQISEIFQGYHQRVHGADALSLQTNSLRSRLSSQCLGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 WRYGKVGCISLPLREMTAWINPPQISEIFQGYHQRVHGADALSLQTNSLRSRLSSQCLGQ
               70        80        90       100       110       120

              130       140       
pF1KB7 SFLLRTLERGRGFRALGDICGHVHEED
       :::::::::::::::::::::::::::
CCDS14 SFLLRTLERGRGFRALGDICGHVHEED
              130       140       

>>CCDS35482.1 PRY2 gene_id:442862|Hs108|chrY              (147 aa)
 initn: 1016 init1: 1016 opt: 1016  Z-score: 1378.4  bits: 261.0 E(32554): 1.9e-70
Smith-Waterman score: 1016; 100.0% identity (100.0% similar) in 147 aa overlap (1-147:1-147)

               10        20        30        40        50        60
pF1KB7 MGATGLGFLLSWRQDNLNGTDCQGCNILYFSETTGSMCSELSLNRGLEARRKKDLKDSFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MGATGLGFLLSWRQDNLNGTDCQGCNILYFSETTGSMCSELSLNRGLEARRKKDLKDSFL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 WRYGKVGCISLPLREMTAWINPPQISEIFQGYHQRVHGADALSLQTNSLRSRLSSQCLGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 WRYGKVGCISLPLREMTAWINPPQISEIFQGYHQRVHGADALSLQTNSLRSRLSSQCLGQ
               70        80        90       100       110       120

              130       140       
pF1KB7 SFLLRTLERGRGFRALGDICGHVHEED
       :::::::::::::::::::::::::::
CCDS35 SFLLRTLERGRGFRALGDICGHVHEED
              130       140       




147 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 07:47:38 2016 done: Fri Nov  4 07:47:38 2016
 Total Scan time:  1.690 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]