FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7436, 147 aa
  1>>>pF1KB7436 147 - 147 aa - 147 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9166+/-0.000303; mu= 13.3129+/- 0.019
 mean_var=54.3035+/-10.937, 0's: 0 Z-trim(116.6): 33  B-trim: 0 in 0/50
 Lambda= 0.174044
 statistics sampled from 27896 (27903) to 27896 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.723), E-opt: 0.2 (0.327), width:  16
 Scan time:  4.780

The best scores are:                                      opt bits E(85289)
NP_004667 (OMIM: 400019,415000) PTPN13-like protei ( 147) 1016 262.5 1.8e-70
NP_001002758 (OMIM: 400041,415000) PTPN13-like pro ( 147) 1016 262.5 1.8e-70
XP_016885577 (OMIM: 400019,415000) PREDICTED: PTPN ( 147) 1016 262.5 1.8e-70


>>NP_004667 (OMIM: 400019,415000) PTPN13-like protein, Y  (147 aa)
 initn: 1016 init1: 1016 opt: 1016  Z-score: 1386.1  bits: 262.5 E(85289): 1.8e-70
Smith-Waterman score: 1016; 100.0% identity (100.0% similar) in 147 aa overlap (1-147:1-147)

               10        20        30        40        50        60
pF1KB7 MGATGLGFLLSWRQDNLNGTDCQGCNILYFSETTGSMCSELSLNRGLEARRKKDLKDSFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MGATGLGFLLSWRQDNLNGTDCQGCNILYFSETTGSMCSELSLNRGLEARRKKDLKDSFL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 WRYGKVGCISLPLREMTAWINPPQISEIFQGYHQRVHGADALSLQTNSLRSRLSSQCLGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 WRYGKVGCISLPLREMTAWINPPQISEIFQGYHQRVHGADALSLQTNSLRSRLSSQCLGQ
               70        80        90       100       110       120

              130       140       
pF1KB7 SFLLRTLERGRGFRALGDICGHVHEED
       :::::::::::::::::::::::::::
NP_004 SFLLRTLERGRGFRALGDICGHVHEED
              130       140       

>>NP_001002758 (OMIM: 400041,415000) PTPN13-like protein  (147 aa)
 initn: 1016 init1: 1016 opt: 1016  Z-score: 1386.1  bits: 262.5 E(85289): 1.8e-70
Smith-Waterman score: 1016; 100.0% identity (100.0% similar) in 147 aa overlap (1-147:1-147)

               10        20        30        40        50        60
pF1KB7 MGATGLGFLLSWRQDNLNGTDCQGCNILYFSETTGSMCSELSLNRGLEARRKKDLKDSFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGATGLGFLLSWRQDNLNGTDCQGCNILYFSETTGSMCSELSLNRGLEARRKKDLKDSFL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 WRYGKVGCISLPLREMTAWINPPQISEIFQGYHQRVHGADALSLQTNSLRSRLSSQCLGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WRYGKVGCISLPLREMTAWINPPQISEIFQGYHQRVHGADALSLQTNSLRSRLSSQCLGQ
               70        80        90       100       110       120

              130       140       
pF1KB7 SFLLRTLERGRGFRALGDICGHVHEED
       :::::::::::::::::::::::::::
NP_001 SFLLRTLERGRGFRALGDICGHVHEED
              130       140       

>>XP_016885577 (OMIM: 400019,415000) PREDICTED: PTPN13-l  (147 aa)
 initn: 1016 init1: 1016 opt: 1016  Z-score: 1386.1  bits: 262.5 E(85289): 1.8e-70
Smith-Waterman score: 1016; 100.0% identity (100.0% similar) in 147 aa overlap (1-147:1-147)

               10        20        30        40        50        60
pF1KB7 MGATGLGFLLSWRQDNLNGTDCQGCNILYFSETTGSMCSELSLNRGLEARRKKDLKDSFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MGATGLGFLLSWRQDNLNGTDCQGCNILYFSETTGSMCSELSLNRGLEARRKKDLKDSFL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 WRYGKVGCISLPLREMTAWINPPQISEIFQGYHQRVHGADALSLQTNSLRSRLSSQCLGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 WRYGKVGCISLPLREMTAWINPPQISEIFQGYHQRVHGADALSLQTNSLRSRLSSQCLGQ
               70        80        90       100       110       120

              130       140       
pF1KB7 SFLLRTLERGRGFRALGDICGHVHEED
       :::::::::::::::::::::::::::
XP_016 SFLLRTLERGRGFRALGDICGHVHEED
              130       140       




147 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 07:47:39 2016 done: Fri Nov  4 07:47:39 2016
 Total Scan time:  4.780 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]