FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7440, 152 aa
  1>>>pF1KB7440 152 - 152 aa - 152 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0568+/-0.000658; mu= 12.6934+/- 0.040
 mean_var=55.3848+/-10.915, 0's: 0 Z-trim(109.0): 9  B-trim: 0 in 0/51
 Lambda= 0.172337
 statistics sampled from 10567 (10572) to 10567 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.725), E-opt: 0.2 (0.325), width:  16
 Scan time:  1.770

The best scores are:                                      opt bits E(32554)
CCDS32426.1 BOLA2 gene_id:552900|Hs108|chr16       ( 152)  990 253.6 3.4e-68
CCDS32430.1 BOLA2B gene_id:654483|Hs108|chr16      ( 152)  990 253.6 3.4e-68


>>CCDS32426.1 BOLA2 gene_id:552900|Hs108|chr16            (152 aa)
 initn: 990 init1: 990 opt: 990  Z-score: 1337.8  bits: 253.6 E(32554): 3.4e-68
Smith-Waterman score: 990; 100.0% identity (100.0% similar) in 152 aa overlap (1-152:1-152)

               10        20        30        40        50        60
pF1KB7 MASAKSLDRWKARLLEGGSTALTYALVRAEVSFPAEVAPVRQQGSVAGARAGVVSLLGCR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MASAKSLDRWKARLLEGGSTALTYALVRAEVSFPAEVAPVRQQGSVAGARAGVVSLLGCR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 SSWTAAMELSAEYLREKLQRDLEAEHVEVEDTTLNRCSCSFRVLVVSAKFEGKPLLQRHR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SSWTAAMELSAEYLREKLQRDLEAEHVEVEDTTLNRCSCSFRVLVVSAKFEGKPLLQRHR
               70        80        90       100       110       120

              130       140       150  
pF1KB7 LVNACLAEELPHIHAFEQKTLTPDQWARERQK
       ::::::::::::::::::::::::::::::::
CCDS32 LVNACLAEELPHIHAFEQKTLTPDQWARERQK
              130       140       150  

>>CCDS32430.1 BOLA2B gene_id:654483|Hs108|chr16           (152 aa)
 initn: 990 init1: 990 opt: 990  Z-score: 1337.8  bits: 253.6 E(32554): 3.4e-68
Smith-Waterman score: 990; 100.0% identity (100.0% similar) in 152 aa overlap (1-152:1-152)

               10        20        30        40        50        60
pF1KB7 MASAKSLDRWKARLLEGGSTALTYALVRAEVSFPAEVAPVRQQGSVAGARAGVVSLLGCR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MASAKSLDRWKARLLEGGSTALTYALVRAEVSFPAEVAPVRQQGSVAGARAGVVSLLGCR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 SSWTAAMELSAEYLREKLQRDLEAEHVEVEDTTLNRCSCSFRVLVVSAKFEGKPLLQRHR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SSWTAAMELSAEYLREKLQRDLEAEHVEVEDTTLNRCSCSFRVLVVSAKFEGKPLLQRHR
               70        80        90       100       110       120

              130       140       150  
pF1KB7 LVNACLAEELPHIHAFEQKTLTPDQWARERQK
       ::::::::::::::::::::::::::::::::
CCDS32 LVNACLAEELPHIHAFEQKTLTPDQWARERQK
              130       140       150  




152 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 07:50:04 2016 done: Fri Nov  4 07:50:04 2016
 Total Scan time:  1.770 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]