Result of FASTA (ccds) for
pF1KB7443
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7443, 292 aa
1>>>pF1KB7443 292 - 292 aa - 292 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.2342+/-0.000856; mu= 6.7772+/- 0.052
mean_var=107.2370+/-21.463, 0's: 0 Z-trim(109.6): 19 B-trim: 0 in 0/52
Lambda= 0.123852
statistics sampled from 10980 (10991) to 10980 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.71), E-opt: 0.2 (0.338), width: 16
Scan time: 2.610
The best scores are: opt bits E(32554)
CCDS54090.1 SHISA6 gene_id:388336|Hs108|chr17 ( 500) 1934 355.9 3.5e-98
CCDS45615.1 SHISA6 gene_id:388336|Hs108|chr17 ( 551) 1556 288.4 8.3e-78
CCDS54089.1 SHISA6 gene_id:388336|Hs108|chr17 ( 532) 1554 288.0 1e-77
>>CCDS54090.1 SHISA6 gene_id:388336|Hs108|chr17 (500 aa)
initn: 1934 init1: 1934 opt: 1934 Z-score: 1876.1 bits: 355.9 E(32554): 3.5e-98
Smith-Waterman score: 1934; 100.0% identity (100.0% similar) in 292 aa overlap (1-292:209-500)
10 20 30
pF1KB7 MNIHRALADILRQQGPIPIAHCERETISAI
::::::::::::::::::::::::::::::
CCDS54 YITCGVIAFVIVAGVFAKVSYDKAHRPPREMNIHRALADILRQQGPIPIAHCERETISAI
180 190 200 210 220 230
40 50 60 70 80 90
pF1KB7 DTSPKENTPVRSSSKNHYTPVRTAKQTPEKPRMNNILTSATEPYDLSFSRSFQNLAHLPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 DTSPKENTPVRSSSKNHYTPVRTAKQTPEKPRMNNILTSATEPYDLSFSRSFQNLAHLPP
240 250 260 270 280 290
100 110 120 130 140 150
pF1KB7 SYESAVKTNPSKYSSLKRLTDKEADEYYMRRRHLPDLAARGTLPLNVIQMSQQKPLPRER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 SYESAVKTNPSKYSSLKRLTDKEADEYYMRRRHLPDLAARGTLPLNVIQMSQQKPLPRER
300 310 320 330 340 350
160 170 180 190 200 210
pF1KB7 PRRPIRAMSQDRVLSPDRGLPDEFSMPYDRILSDEQLLSTERLHSQDPLLSPERTAFPEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 PRRPIRAMSQDRVLSPDRGLPDEFSMPYDRILSDEQLLSTERLHSQDPLLSPERTAFPEQ
360 370 380 390 400 410
220 230 240 250 260 270
pF1KB7 SLSRAISHTDVFVSTPVLDRYRMSKMHSHPSASNNSYATLGQSQTAAKRHAFASRRHNTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 SLSRAISHTDVFVSTPVLDRYRMSKMHSHPSASNNSYATLGQSQTAAKRHAFASRRHNTV
420 430 440 450 460 470
280 290
pF1KB7 EQLHYIPGHHTCYTASKTEVTV
::::::::::::::::::::::
CCDS54 EQLHYIPGHHTCYTASKTEVTV
480 490 500
>>CCDS45615.1 SHISA6 gene_id:388336|Hs108|chr17 (551 aa)
initn: 1920 init1: 1549 opt: 1556 Z-score: 1510.4 bits: 288.4 E(32554): 8.3e-78
Smith-Waterman score: 1694; 84.3% identity (84.3% similar) in 324 aa overlap (20-292:228-551)
10 20 30 40
pF1KB7 MNIHRALADILRQQGPIPIAHCERETISAIDTSPKENTPVRSSSKNHYT
::::::::::::::::::::::::::::::
CCDS45 SYDKAHRPPREMNIHRALADILRQQGPIPIAHCERETISAIDTSPKENTPVRSSSKNHYT
200 210 220 230 240 250
50
pF1KB7 PVRTAKQTP---------------------------------------------------
:::::::::
CCDS45 PVRTAKQTPGHYGKDAYRSGGPDLHNFISSGFVTLGRGHTKGDHQYNHPILSSVTQIPPH
260 270 280 290 300 310
60 70 80 90 100 110
pF1KB7 EKPRMNNILTSATEPYDLSFSRSFQNLAHLPPSYESAVKTNPSKYSSLKRLTDKEADEYY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 EKPRMNNILTSATEPYDLSFSRSFQNLAHLPPSYESAVKTNPSKYSSLKRLTDKEADEYY
320 330 340 350 360 370
120 130 140 150 160 170
pF1KB7 MRRRHLPDLAARGTLPLNVIQMSQQKPLPRERPRRPIRAMSQDRVLSPDRGLPDEFSMPY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MRRRHLPDLAARGTLPLNVIQMSQQKPLPRERPRRPIRAMSQDRVLSPDRGLPDEFSMPY
380 390 400 410 420 430
180 190 200 210 220 230
pF1KB7 DRILSDEQLLSTERLHSQDPLLSPERTAFPEQSLSRAISHTDVFVSTPVLDRYRMSKMHS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 DRILSDEQLLSTERLHSQDPLLSPERTAFPEQSLSRAISHTDVFVSTPVLDRYRMSKMHS
440 450 460 470 480 490
240 250 260 270 280 290
pF1KB7 HPSASNNSYATLGQSQTAAKRHAFASRRHNTVEQLHYIPGHHTCYTASKTEVTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 HPSASNNSYATLGQSQTAAKRHAFASRRHNTVEQLHYIPGHHTCYTASKTEVTV
500 510 520 530 540 550
>>CCDS54089.1 SHISA6 gene_id:388336|Hs108|chr17 (532 aa)
initn: 1554 init1: 1554 opt: 1554 Z-score: 1508.7 bits: 288.0 E(32554): 1e-77
Smith-Waterman score: 1860; 90.1% identity (90.1% similar) in 324 aa overlap (1-292:209-532)
10 20 30
pF1KB7 MNIHRALADILRQQGPIPIAHCERETISAI
::::::::::::::::::::::::::::::
CCDS54 YITCGVIAFVIVAGVFAKVSYDKAHRPPREMNIHRALADILRQQGPIPIAHCERETISAI
180 190 200 210 220 230
40 50
pF1KB7 DTSPKENTPVRSSSKNHYTPVRTAKQTP--------------------------------
::::::::::::::::::::::::::::
CCDS54 DTSPKENTPVRSSSKNHYTPVRTAKQTPGHYGKDAYRSGGPDLHNFISSGFVTLGRGHTK
240 250 260 270 280 290
60 70 80 90 100 110
pF1KB7 EKPRMNNILTSATEPYDLSFSRSFQNLAHLPPSYESAVKTNPSKYSSLKRLTDKEADEYY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 EKPRMNNILTSATEPYDLSFSRSFQNLAHLPPSYESAVKTNPSKYSSLKRLTDKEADEYY
300 310 320 330 340 350
120 130 140 150 160 170
pF1KB7 MRRRHLPDLAARGTLPLNVIQMSQQKPLPRERPRRPIRAMSQDRVLSPDRGLPDEFSMPY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MRRRHLPDLAARGTLPLNVIQMSQQKPLPRERPRRPIRAMSQDRVLSPDRGLPDEFSMPY
360 370 380 390 400 410
180 190 200 210 220 230
pF1KB7 DRILSDEQLLSTERLHSQDPLLSPERTAFPEQSLSRAISHTDVFVSTPVLDRYRMSKMHS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 DRILSDEQLLSTERLHSQDPLLSPERTAFPEQSLSRAISHTDVFVSTPVLDRYRMSKMHS
420 430 440 450 460 470
240 250 260 270 280 290
pF1KB7 HPSASNNSYATLGQSQTAAKRHAFASRRHNTVEQLHYIPGHHTCYTASKTEVTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 HPSASNNSYATLGQSQTAAKRHAFASRRHNTVEQLHYIPGHHTCYTASKTEVTV
480 490 500 510 520 530
292 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 07:52:00 2016 done: Fri Nov 4 07:52:00 2016
Total Scan time: 2.610 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]