Result of FASTA (omim) for
pF1KB7444
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7444, 496 aa
1>>>pF1KB7444 496 - 496 aa - 496 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.4126+/-0.000482; mu= 12.6207+/- 0.031
mean_var=365.5751+/-83.055, 0's: 0 Z-trim(119.9): 103 B-trim: 3858 in 2/52
Lambda= 0.067079
statistics sampled from 34343 (34515) to 34343 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.723), E-opt: 0.2 (0.405), width: 16
Scan time: 9.340
The best scores are: opt bits E(85289)
NP_005049 (OMIM: 400006,415000) RNA-binding motif ( 496) 3471 350.3 7.6e-96
XP_011529739 (OMIM: 400006,415000) PREDICTED: RNA- ( 422) 2772 282.5 1.6e-75
NP_001307874 (OMIM: 400006,415000) RNA-binding mot ( 356) 2543 260.2 6.9e-69
NP_001307873 (OMIM: 400006,415000) RNA-binding mot ( 459) 2309 237.8 5.2e-62
XP_016885549 (OMIM: 400006,415000) PREDICTED: RNA- ( 435) 2050 212.7 1.8e-54
XP_011529740 (OMIM: 400006,415000) PREDICTED: RNA- ( 385) 1810 189.4 1.6e-47
NP_002130 (OMIM: 300199,300238) RNA-binding motif ( 391) 1197 130.0 1.2e-29
NP_055284 (OMIM: 605444) RNA-binding motif protein ( 392) 887 100.0 1.3e-20
NP_001158275 (OMIM: 300199,300238) RNA-binding mot ( 196) 369 49.4 1.1e-05
XP_016881726 (OMIM: 602649) PREDICTED: cold-induci ( 168) 348 47.3 4.2e-05
NP_001287744 (OMIM: 602649) cold-inducible RNA-bin ( 168) 348 47.3 4.2e-05
XP_006722700 (OMIM: 602649) PREDICTED: cold-induci ( 172) 348 47.3 4.3e-05
NP_001271 (OMIM: 602649) cold-inducible RNA-bindin ( 172) 348 47.3 4.3e-05
XP_011525970 (OMIM: 602649) PREDICTED: cold-induci ( 202) 348 47.4 4.6e-05
NP_001287758 (OMIM: 602649) cold-inducible RNA-bin ( 297) 349 47.8 5.2e-05
NP_006734 (OMIM: 300027) RNA-binding protein 3 [Ho ( 157) 290 41.6 0.002
>>NP_005049 (OMIM: 400006,415000) RNA-binding motif prot (496 aa)
initn: 3471 init1: 3471 opt: 3471 Z-score: 1841.8 bits: 350.3 E(85289): 7.6e-96
Smith-Waterman score: 3471; 99.2% identity (99.4% similar) in 496 aa overlap (1-496:1-496)
10 20 30 40 50 60
pF1KB7 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPAD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 AKNAAKDMNGTSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSSGGTR
:::::::::: :::::::::::::::::::::::::::::::::::::::::::: ::::
NP_005 AKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGTR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 GWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 GWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 QGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 QGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 RDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNHRSSR
:::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::
NP_005 RDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNRRSSR
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 ETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAYRDYGHSSWD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 ETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAYRDYGHSSWD
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 EHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 EHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHA
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB7 YSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNPPSLGRVLPDPREAYGSSSYVASI
:::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::
NP_005 YSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNPPSLGRVLPDPREACGSSSYVASI
430 440 450 460 470 480
490
pF1KB7 VDGGESRSEKGDSSRY
::::::::::::::::
NP_005 VDGGESRSEKGDSSRY
490
>>XP_011529739 (OMIM: 400006,415000) PREDICTED: RNA-bind (422 aa)
initn: 3730 init1: 2772 opt: 2772 Z-score: 1476.8 bits: 282.5 E(85289): 1.6e-75
Smith-Waterman score: 2772; 99.0% identity (99.5% similar) in 399 aa overlap (1-399:1-399)
10 20 30 40 50 60
pF1KB7 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPAD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 AKNAAKDMNGTSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSSGGTR
:::::::::: :::::::::::::::::::::::::::::::::::::::::::: ::::
XP_011 AKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGTR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 GWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 QGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 RDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNHRSSR
:::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::
XP_011 RDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNRRSSR
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 ETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAYRDYGHSSWD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAYRDYGHSSWD
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 EHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHA
:::::::::::::::::::::::::::::::::::::.:
XP_011 EHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYATLFQKTVHITAEITWTGPKRGG
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB7 YSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNPPSLGRVLPDPREAYGSSSYVASI
XP_011 GG
>>NP_001307874 (OMIM: 400006,415000) RNA-binding motif p (356 aa)
initn: 2543 init1: 2543 opt: 2543 Z-score: 1357.7 bits: 260.2 E(85289): 6.9e-69
Smith-Waterman score: 2543; 99.4% identity (99.7% similar) in 356 aa overlap (141-496:1-356)
120 130 140 150 160 170
pF1KB7 SARGSSGGTRGWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSA
::::::::::::::::::::::::::::::
NP_001 MSYSRGLIPVKRGPSSRSGGPPPKKSAPSA
10 20 30
180 190 200 210 220 230
pF1KB7 VARSNSWMGSQGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VARSNSWMGSQGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRD
40 50 60 70 80 90
240 250 260 270 280 290
pF1KB7 YAPPSRGYAYRDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YAPPSRGYAYRDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYS
100 110 120 130 140 150
300 310 320 330 340 350
pF1KB7 RGYRNHRSSRETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYA
:::::.::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RGYRNRRSSRETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYA
160 170 180 190 200 210
360 370 380 390 400 410
pF1KB7 YRDYGHSSWDEHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YRDYGHSSWDEHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPR
220 230 240 250 260 270
420 430 440 450 460 470
pF1KB7 MSYGGSTCHAYSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNPPSLGRVLPDPREA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSYGGSTCHAYSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNPPSLGRVLPDPREA
280 290 300 310 320 330
480 490
pF1KB7 YGSSSYVASIVDGGESRSEKGDSSRY
:::::::::::::::::::::::::
NP_001 CGSSSYVASIVDGGESRSEKGDSSRY
340 350
>>NP_001307873 (OMIM: 400006,415000) RNA-binding motif p (459 aa)
initn: 2287 init1: 2287 opt: 2309 Z-score: 1234.3 bits: 237.8 E(85289): 5.2e-62
Smith-Waterman score: 3108; 91.7% identity (91.9% similar) in 496 aa overlap (1-496:1-459)
10 20 30 40 50 60
pF1KB7 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPAD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 AKNAAKDMNGTSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSSGGTR
:::::::::: :::::::::::::::::::::::::::::::::::::::::::: ::::
NP_001 AKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGTR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 GWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 QGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 RDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNHRSSR
:::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::
NP_001 RDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNRRSSR
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 ETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAYRDYGHSSWD
::::::::::::::::::::::::::::::
NP_001 ETREYAPPSRGHGYRDYGHSRRHESYSRGY------------------------------
310 320 330
370 380 390 400 410 420
pF1KB7 EHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHA
:::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 -------SYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHA
340 350 360 370 380
430 440 450 460 470 480
pF1KB7 YSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNPPSLGRVLPDPREAYGSSSYVASI
:::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::
NP_001 YSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNPPSLGRVLPDPREACGSSSYVASI
390 400 410 420 430 440
490
pF1KB7 VDGGESRSEKGDSSRY
::::::::::::::::
NP_001 VDGGESRSEKGDSSRY
450
>>XP_016885549 (OMIM: 400006,415000) PREDICTED: RNA-bind (435 aa)
initn: 2025 init1: 2025 opt: 2050 Z-score: 1099.1 bits: 212.7 E(85289): 1.8e-54
Smith-Waterman score: 2849; 88.2% identity (89.3% similar) in 475 aa overlap (22-496:3-435)
10 20 30 40 50 60
pF1KB7 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPAD
. :: .:. : . ::::::::::::::::::::
XP_016 MRRCLKQYLGNMVPYQ-----KDRTSKSRGFAFITFENPAD
10 20 30
70 80 90 100 110 120
pF1KB7 AKNAAKDMNGTSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSSGGTR
:::::::::: :::::::::::::::::::::::::::::::::::::::::::: ::::
XP_016 AKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGTR
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB7 GWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGS
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB7 QGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAY
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB7 RDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNHRSSR
:::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::
XP_016 RDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNRRSSR
220 230 240 250 260 270
310 320 330 340 350 360
pF1KB7 ETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAYRDYGHSSWD
::::::::::::::::::::::::::::::
XP_016 ETREYAPPSRGHGYRDYGHSRRHESYSRGY------------------------------
280 290 300
370 380 390 400 410 420
pF1KB7 EHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHA
:::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 -------SYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHA
310 320 330 340 350
430 440 450 460 470 480
pF1KB7 YSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNPPSLGRVLPDPREAYGSSSYVASI
:::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::
XP_016 YSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNPPSLGRVLPDPREACGSSSYVASI
360 370 380 390 400 410
490
pF1KB7 VDGGESRSEKGDSSRY
::::::::::::::::
XP_016 VDGGESRSEKGDSSRY
420 430
>>XP_011529740 (OMIM: 400006,415000) PREDICTED: RNA-bind (385 aa)
initn: 1764 init1: 1764 opt: 1810 Z-score: 974.0 bits: 189.4 E(85289): 1.6e-47
Smith-Waterman score: 2437; 77.0% identity (77.0% similar) in 496 aa overlap (1-496:1-385)
10 20 30 40 50 60
pF1KB7 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPAD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 AKNAAKDMNGTSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSSGGTR
:::::::::: :::::::::::::::::::::::::::::::::::::::::::: ::::
XP_011 AKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGTR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 GWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 QGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 RDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNHRSSR
::::::::::::::::
XP_011 RDNGHSNRDEHSSRGY--------------------------------------------
250
310 320 330 340 350 360
pF1KB7 ETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAYRDYGHSSWD
XP_011 ------------------------------------------------------------
370 380 390 400 410 420
pF1KB7 EHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHA
:::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 -------SYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHA
260 270 280 290 300
430 440 450 460 470 480
pF1KB7 YSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNPPSLGRVLPDPREAYGSSSYVASI
:::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::
XP_011 YSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNPPSLGRVLPDPREACGSSSYVASI
310 320 330 340 350 360
490
pF1KB7 VDGGESRSEKGDSSRY
::::::::::::::::
XP_011 VDGGESRSEKGDSSRY
370 380
>>NP_002130 (OMIM: 300199,300238) RNA-binding motif prot (391 aa)
initn: 999 init1: 393 opt: 1197 Z-score: 653.4 bits: 130.0 E(85289): 1.2e-29
Smith-Waterman score: 1294; 48.6% identity (63.3% similar) in 502 aa overlap (1-496:1-391)
10 20 30 40 50
pF1KB7 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPA
:::::.:::::::::: ::::: :.:::::.: : ::::.::: :.:::::::.:::.::
NP_002 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB7 DAKNAAKDMNGTSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSSGGT
:::.::.:::: :: ::::::::: ::::.:: :: :: :.:.: .::..::.::::
NP_002 DAKDAARDMNGKSLDGKAIKVEQATKPSFESG-RRGPPPPPRSRGPPRGLRGGRGGSGGT
70 80 90 100 110
120 130 140 150 160 170
pF1KB7 RGWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMG
:: ::. ::.:::::. ...:: ::: .:::::: ::::::::.::::. .::.: ::
NP_002 RGP-PSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKRSAPSGPVRSSSGMG
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB7 SQGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYA
...:.:. :..:: :::: . : :. .: : :::.:.:
NP_002 GRAPVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKD--------------------
180 190 200 210
240 250 260 270 280 290
pF1KB7 YRDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNHRSS
:::
NP_002 ------------------------------------------------SYSS--------
220
300 310 320 330 340 350
pF1KB7 RETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAYRDYGHSS-
::: ::::.::::::: :::.::::::::
NP_002 ---------------RDY----------------PSSRDTRDYAPPPRDYTYRDYGHSSS
230 240 250
360 370 380 390 400 410
pF1KB7 WDEHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTC
:.. ::::: .::::. ::.:.: ::.::::. . ::.:..:::.::: :::::.
NP_002 RDDYPSRGYSDRDGYGR--DRDYSDHPSGGSYRDSYESYGNSRSAPPTRGPPPSYGGSSR
260 270 280 290 300
420 430 440 450 460 470
pF1KB7 HA-YSNTRDRYGRSWESYSSC-GDFHYCDREHVCRKDQRNPPSLGRVLPDPREAYGSSSY
. ::..:: :: : .:::: .:.. :..: :... :::. : : ::..:.:::
NP_002 YDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDRVGRQERGLPPSMERGYPPPRDSYSSSSR
310 320 330 340 350 360
480 490
pF1KB7 VASIVDG-GESRSEKGDS-SRY
: : : :::..: . :::
NP_002 GAPRGGGRGGSRSDRGGGRSRY
370 380 390
>>NP_055284 (OMIM: 605444) RNA-binding motif protein, X- (392 aa)
initn: 631 init1: 273 opt: 887 Z-score: 491.2 bits: 100.0 E(85289): 1.3e-20
Smith-Waterman score: 909; 47.5% identity (65.9% similar) in 375 aa overlap (1-352:1-367)
10 20 30 40 50
pF1KB7 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPA
:::::.:::::::::: ::.:: :.: :::.: : ::::.::: :.:::::::.:::.::
NP_055 MVEADRPGKLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB7 DAKNAAKDMNGTSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSSGGT
::: ::.:::: :: :::::: :: ::.:.:. : :: ::.: : ::..::..::
NP_055 DAKAAARDMNGKSLDGKAIKVAQATKPAFESSRRGPPPPRSRGR-PR-FLRGTRGGGGGP
70 80 90 100 110
120 130 140 150 160 170
pF1KB7 RGWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMG
: ::. : :::::: :. . ::. .:.:::: : :::::..:::. ::: : :
NP_055 RR-SPSRGGPDDDGGYTADFDLRPSRAPMPMKRGPPPRRVGPPPKRAAPSGPARS-SGGG
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB7 SQG-PMSQR-RENYGVPPRRATISSWRNDRMSTRHDGYATNDG-NHPSCQETRDYAPPSR
.: .. : :..:. :::: . :. .. : .::.. :: . . .: : .::
NP_055 MRGRALAVRGRDGYSGPPRREPLPPRRDPYLGPRDEGYSSRDGYSSRDYREPRGFAPSPG
180 190 200 210 220 230
240 250 260 270 280
pF1KB7 GYAYRDNGHSN-RDEHSSRGY--RNHRSSRETRDYAPP-SRG-H--AYRDYGHSRRDESY
:..:: :::. ::. ::: :. ..:. :::. ::: : ...::. : .
NP_055 EYTHRDYGHSSVRDDCPLRGYSDRDGYGGRD-RDYGDHLSRGSHREPFESYGELR-GAAP
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB7 SRG----YRNHRSSRETREYAPPSRGHGYRDYGHSR-RHESYSRGYRNHPSSRETRDYA-
.:: : . .: : :.: . . : .:. : : . :::: : .: : .
NP_055 GRGTPPSYGGGGRYEEYRGYSPDAYSGGRDSYSSSYGRSDRYSRGR--HRVGRPDRGLSL
300 310 320 330 340 350
350 360 370 380 390
pF1KB7 ------PPHRDYAYRDYGHSSWDEHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRY
::.:: :
NP_055 SMERGCPPQRDSYSRSGCRVPRGGGRLGGRLERGGGRSRY
360 370 380 390
>>NP_001158275 (OMIM: 300199,300238) RNA-binding motif p (196 aa)
initn: 361 init1: 222 opt: 369 Z-score: 223.0 bits: 49.4 E(85289): 1.1e-05
Smith-Waterman score: 369; 73.5% identity (86.7% similar) in 83 aa overlap (1-81:1-83)
10 20 30 40 50
pF1KB7 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPA
:::::.:::::::::: ::::: :.:::::.: : ::::.::: :.:::::::.:::.::
NP_001 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB7 DAKNAAKDMNGTSL-HGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSSGG
:::.::.:::: : : . : .:
NP_001 DAKDAARDMNGKLLYHVEEIVMEVHLEGNRCPLVEMFICPQEMMGILLKTAIQAEITQVL
70 80 90 100 110 120
>>XP_016881726 (OMIM: 602649) PREDICTED: cold-inducible (168 aa)
initn: 237 init1: 161 opt: 348 Z-score: 212.6 bits: 47.3 E(85289): 4.2e-05
Smith-Waterman score: 348; 43.5% identity (66.5% similar) in 170 aa overlap (4-169:2-166)
10 20 30 40 50
pF1KB7 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPA
:. ::::.:::. .:::. :. ::.:.: ::::...::: :..::::.:.::::
XP_016 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENID
10 20 30 40 50
60 70 80 90 100 110
pF1KB7 DAKNAAKDMNGTSLHGKAIKVEQAKKPS-FQSGGRRRPPASSRNRSPSGSLRSARGSS--
:::.: ::: :. :. :.:.:: : : .: : : :..:. .: :. :: :
XP_016 DAKDAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRGRG-RGFSRG
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB7 GGTRGWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNS
:: ::. ... . .::: . . ::. . : :.::.: . : :
XP_016 GGDRGY-GGNRFESRSGGYGGSRDYYSSRSQ---SGGYSDRSSGGSYRDSYDSYG
120 130 140 150 160
180 190 200 210 220 230
pF1KB7 WMGSQGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSR
496 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 07:52:51 2016 done: Fri Nov 4 07:52:52 2016
Total Scan time: 9.340 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]