Result of FASTA (ccds) for
pF1KB7449
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7449, 188 aa
1>>>pF1KB7449 188 - 188 aa - 188 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.9934+/-0.000737; mu= 12.0107+/- 0.045
mean_var=111.9124+/-22.542, 0's: 0 Z-trim(112.8): 24 B-trim: 65 in 1/52
Lambda= 0.121237
statistics sampled from 13487 (13509) to 13487 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.78), E-opt: 0.2 (0.415), width: 16
Scan time: 2.090
The best scores are: opt bits E(32554)
CCDS14290.1 SSX1 gene_id:6756|Hs108|chrX ( 188) 1019 187.9 3.2e-48
CCDS14344.2 SSX2 gene_id:6757|Hs108|chrX ( 188) 1015 187.2 5.3e-48
CCDS48129.1 SSX2B gene_id:727837|Hs108|chrX ( 188) 1015 187.2 5.3e-48
CCDS14343.1 SSX7 gene_id:280658|Hs108|chrX ( 188) 1005 185.4 1.8e-47
CCDS14291.1 SSX3 gene_id:10214|Hs108|chrX ( 188) 985 181.9 2e-46
CCDS35240.1 SSX4 gene_id:6759|Hs108|chrX ( 188) 967 178.8 1.8e-45
CCDS35241.1 SSX4B gene_id:548313|Hs108|chrX ( 188) 967 178.8 1.8e-45
CCDS14289.1 SSX5 gene_id:6758|Hs108|chrX ( 188) 961 177.7 3.7e-45
CCDS14288.1 SSX5 gene_id:6758|Hs108|chrX ( 229) 878 163.3 1e-40
CCDS65267.1 SSX2B gene_id:727837|Hs108|chrX ( 223) 806 150.7 6e-37
CCDS14345.2 SSX2 gene_id:6757|Hs108|chrX ( 223) 806 150.7 6e-37
CCDS43935.1 SSX4B gene_id:548313|Hs108|chrX ( 153) 529 102.1 1.8e-22
CCDS43934.1 SSX4 gene_id:6759|Hs108|chrX ( 153) 529 102.1 1.8e-22
>>CCDS14290.1 SSX1 gene_id:6756|Hs108|chrX (188 aa)
initn: 1051 init1: 1019 opt: 1019 Z-score: 979.1 bits: 187.9 E(32554): 3.2e-48
Smith-Waterman score: 1019; 81.4% identity (92.6% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB7 MNGDDAFAKRPRDDAKASEKRSKAFDDIAKYFSKEEWEKMKFSEKISCVHMKRKYEAMTK
:::::.::::::::::::::::::::::: ::::.::.:::.::::: :.:::.:.::::
CCDS14 MNGDDTFAKRPRDDAKASEKRSKAFDDIATYFSKKEWKKMKYSEKISYVYMKRNYKAMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LGFNVTLSLFMRNKRATDSQRNDSDNDRNRGNEVERPQMTFGRLQRIIPKIMPEKPAEEG
:::.::: :: ::.::: : :: :::.:: .::.::::::::.::::::::.::::.
CCDS14 LGFKVTLPPFMCNKQATDFQGNDFDNDHNRRIQVEHPQMTFGRLHRIIPKIMPKKPAEDE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 SDSKGVPEASGPQNDGKKLCPPGKASSSEKIHERSGPKRGKHAWTHRLRERKQLVIYEEI
.::::: ::::::::::.: :::::. ::::..:::::::::::::::::::::::::::
CCDS14 NDSKGVSEASGPQNDGKQLHPPGKANISEKINKRSGPKRGKHAWTHRLRERKQLVIYEEI
130 140 150 160 170 180
pF1KB7 SDPEEDDK
:::::::.
CCDS14 SDPEEDDE
>>CCDS14344.2 SSX2 gene_id:6757|Hs108|chrX (188 aa)
initn: 1084 init1: 1015 opt: 1015 Z-score: 975.3 bits: 187.2 E(32554): 5.3e-48
Smith-Waterman score: 1015; 80.9% identity (88.8% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB7 MNGDDAFAKRPRDDAKASEKRSKAFDDIAKYFSKEEWEKMKFSEKISCVHMKRKYEAMTK
::::::::.:: :. :: .::::::::::::::::::: :::: :.::::::::::
CCDS14 MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKIFYVYMKRKYEAMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LGFNVTLSLFMRNKRATDSQRNDSDNDRNRGNEVERPQMTFGRLQRIIPKIMPEKPAEEG
:::..:: :: :::: : : :: ::: ::::.:::::::::::: : :::::.::::::
CCDS14 LGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFGRLQGISPKIMPKKPAEEG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 SDSKGVPEASGPQNDGKKLCPPGKASSSEKIHERSGPKRGKHAWTHRLRERKQLVIYEEI
.::. ::::::::::::.:::::: ..:::::::::::::.:::::::::::::::::::
CCDS14 NDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGPKRGEHAWTHRLRERKQLVIYEEI
130 140 150 160 170 180
pF1KB7 SDPEEDDK
:::::::.
CCDS14 SDPEEDDE
>>CCDS48129.1 SSX2B gene_id:727837|Hs108|chrX (188 aa)
initn: 1084 init1: 1015 opt: 1015 Z-score: 975.3 bits: 187.2 E(32554): 5.3e-48
Smith-Waterman score: 1015; 80.9% identity (88.8% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB7 MNGDDAFAKRPRDDAKASEKRSKAFDDIAKYFSKEEWEKMKFSEKISCVHMKRKYEAMTK
::::::::.:: :. :: .::::::::::::::::::: :::: :.::::::::::
CCDS48 MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKIFYVYMKRKYEAMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LGFNVTLSLFMRNKRATDSQRNDSDNDRNRGNEVERPQMTFGRLQRIIPKIMPEKPAEEG
:::..:: :: :::: : : :: ::: ::::.:::::::::::: : :::::.::::::
CCDS48 LGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFGRLQGISPKIMPKKPAEEG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 SDSKGVPEASGPQNDGKKLCPPGKASSSEKIHERSGPKRGKHAWTHRLRERKQLVIYEEI
.::. ::::::::::::.:::::: ..:::::::::::::.:::::::::::::::::::
CCDS48 NDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGPKRGEHAWTHRLRERKQLVIYEEI
130 140 150 160 170 180
pF1KB7 SDPEEDDK
:::::::.
CCDS48 SDPEEDDE
>>CCDS14343.1 SSX7 gene_id:280658|Hs108|chrX (188 aa)
initn: 1037 init1: 1005 opt: 1005 Z-score: 965.8 bits: 185.4 E(32554): 1.8e-47
Smith-Waterman score: 1005; 79.8% identity (89.9% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB7 MNGDDAFAKRPRDDAKASEKRSKAFDDIAKYFSKEEWEKMKFSEKISCVHMKRKYEAMTK
::::::::.::: :. :: .:.::::::::::.:::::: :::: :.::::::::::
CCDS14 MNGDDAFARRPRAGAQIPEKIQKSFDDIAKYFSKKEWEKMKSLEKISYVYMKRKYEAMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LGFNVTLSLFMRNKRATDSQRNDSDNDRNRGNEVERPQMTFGRLQRIIPKIMPEKPAEEG
:::..:: ::.: ::: : :: :::::.::.:::::::: :::::.:::::.::::::
CCDS14 LGFKATLPPFMHNTGATDLQGNDFDNDRNQGNQVERPQMTFCRLQRIFPKIMPKKPAEEG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 SDSKGVPEASGPQNDGKKLCPPGKASSSEKIHERSGPKRGKHAWTHRLRERKQLVIYEEI
.:::::::::: :::::.:::::: :.::::.. ::::::::::::::::::::::::::
CCDS14 NDSKGVPEASGSQNDGKHLCPPGKPSTSEKINKTSGPKRGKHAWTHRLRERKQLVIYEEI
130 140 150 160 170 180
pF1KB7 SDPEEDDK
:::::::.
CCDS14 SDPEEDDE
>>CCDS14291.1 SSX3 gene_id:10214|Hs108|chrX (188 aa)
initn: 985 init1: 985 opt: 985 Z-score: 946.9 bits: 181.9 E(32554): 2e-46
Smith-Waterman score: 985; 78.2% identity (88.3% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB7 MNGDDAFAKRPRDDAKASEKRSKAFDDIAKYFSKEEWEKMKFSEKISCVHMKRKYEAMTK
:::::.::.:: :. :: .::::::::::::::::::: :::: :.::::::::::
CCDS14 MNGDDTFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKVSEKIVYVYMKRKYEAMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LGFNVTLSLFMRNKRATDSQRNDSDNDRNRGNEVERPQMTFGRLQRIIPKIMPEKPAEEG
:::.. : ::::::.:: : :: ::: ::::.:.:::::::::: :.:::::.::::::
CCDS14 LGFKAILPSFMRNKRVTDFQGNDFDNDPNRGNQVQRPQMTFGRLQGIFPKIMPKKPAEEG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 SDSKGVPEASGPQNDGKKLCPPGKASSSEKIHERSGPKRGKHAWTHRLRERKQLVIYEEI
. :: ::::::::::::.:::::: ..::::. ::::::.:::::::::::::::::::
CCDS14 NVSKEVPEASGPQNDGKQLCPPGKPTTSEKINMISGPKRGEHAWTHRLRERKQLVIYEEI
130 140 150 160 170 180
pF1KB7 SDPEEDDK
:::::::.
CCDS14 SDPEEDDE
>>CCDS35240.1 SSX4 gene_id:6759|Hs108|chrX (188 aa)
initn: 1002 init1: 967 opt: 967 Z-score: 929.9 bits: 178.8 E(32554): 1.8e-45
Smith-Waterman score: 967; 76.6% identity (88.3% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB7 MNGDDAFAKRPRDDAKASEKRSKAFDDIAKYFSKEEWEKMKFSEKISCVHMKRKYEAMTK
::::::::.::::::. ::: ::::::::::::.:::::: :::: :.:: .::.:::
CCDS35 MNGDDAFARRPRDDAQISEKLRKAFDDIAKYFSKKEWEKMKSSEKIVYVYMKLNYEVMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LGFNVTLSLFMRNKRATDSQRNDSDNDRNRGNEVERPQMTFGRLQRIIPKIMPEKPAEEG
:::.::: :::.:::.: . :: ::::. :.::::::::: ::::.:::::.:::::
CCDS35 LGFKVTLPPFMRSKRAADFHGNDFGNDRNHRNQVERPQMTFGSLQRIFPKIMPKKPAEEE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 SDSKGVPEASGPQNDGKKLCPPGKASSSEKIHERSGPKRGKHAWTHRLRERKQLVIYEEI
. : ::::::::::::.:::::. :. :::.. :::::::::::::::::::::.::::
CCDS35 NGLKEVPEASGPQNDGKQLCPPGNPSTLEKINKTSGPKRGKHAWTHRLRERKQLVVYEEI
130 140 150 160 170 180
pF1KB7 SDPEEDDK
:::::::.
CCDS35 SDPEEDDE
>>CCDS35241.1 SSX4B gene_id:548313|Hs108|chrX (188 aa)
initn: 1002 init1: 967 opt: 967 Z-score: 929.9 bits: 178.8 E(32554): 1.8e-45
Smith-Waterman score: 967; 76.6% identity (88.3% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB7 MNGDDAFAKRPRDDAKASEKRSKAFDDIAKYFSKEEWEKMKFSEKISCVHMKRKYEAMTK
::::::::.::::::. ::: ::::::::::::.:::::: :::: :.:: .::.:::
CCDS35 MNGDDAFARRPRDDAQISEKLRKAFDDIAKYFSKKEWEKMKSSEKIVYVYMKLNYEVMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LGFNVTLSLFMRNKRATDSQRNDSDNDRNRGNEVERPQMTFGRLQRIIPKIMPEKPAEEG
:::.::: :::.:::.: . :: ::::. :.::::::::: ::::.:::::.:::::
CCDS35 LGFKVTLPPFMRSKRAADFHGNDFGNDRNHRNQVERPQMTFGSLQRIFPKIMPKKPAEEE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 SDSKGVPEASGPQNDGKKLCPPGKASSSEKIHERSGPKRGKHAWTHRLRERKQLVIYEEI
. : ::::::::::::.:::::. :. :::.. :::::::::::::::::::::.::::
CCDS35 NGLKEVPEASGPQNDGKQLCPPGNPSTLEKINKTSGPKRGKHAWTHRLRERKQLVVYEEI
130 140 150 160 170 180
pF1KB7 SDPEEDDK
:::::::.
CCDS35 SDPEEDDE
>>CCDS14289.1 SSX5 gene_id:6758|Hs108|chrX (188 aa)
initn: 1020 init1: 961 opt: 961 Z-score: 924.3 bits: 177.7 E(32554): 3.7e-45
Smith-Waterman score: 961; 75.5% identity (89.4% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB7 MNGDDAFAKRPRDDAKASEKRSKAFDDIAKYFSKEEWEKMKFSEKISCVHMKRKYEAMTK
:::::::..::: .. :: .:::::::::::..:::::: :::: :.::::::::::
CCDS14 MNGDDAFVRRPRVGSQIPEKMQKAFDDIAKYFSEKEWEKMKASEKIIYVYMKRKYEAMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LGFNVTLSLFMRNKRATDSQRNDSDNDRNRGNEVERPQMTFGRLQRIIPKIMPEKPAEEG
:::..:: ::::::..: : :: ::: ::::.::.::::::::: :.::: ::::::::
CCDS14 LGFKATLPPFMRNKRVADFQGNDFDNDPNRGNQVEHPQMTFGRLQGIFPKITPEKPAEEG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 SDSKGVPEASGPQNDGKKLCPPGKASSSEKIHERSGPKRGKHAWTHRLRERKQLVIYEEI
.:::::::::::::.::.: : :: ..:::... :::::::::::::.::::::::::::
CCDS14 NDSKGVPEASGPQNNGKQLRPSGKLNTSEKVNKTSGPKRGKHAWTHRVRERKQLVIYEEI
130 140 150 160 170 180
pF1KB7 SDPEEDDK
:::.:::.
CCDS14 SDPQEDDE
>>CCDS14288.1 SSX5 gene_id:6758|Hs108|chrX (229 aa)
initn: 947 init1: 871 opt: 878 Z-score: 844.7 bits: 163.3 E(32554): 1e-40
Smith-Waterman score: 878; 72.1% identity (88.5% similar) in 183 aa overlap (9-188:47-229)
10 20 30
pF1KB7 MNGDDAFAKRPRDDAKA---SEKRSKAFDDIAKYFSKE
..: .. :: .. ...::::::::::..
CCDS14 IPEKMQKHPWRQVCDRGIHLVNLSPFWKVGREPASSIKALLCGRGEARAFDDIAKYFSEK
20 30 40 50 60 70
40 50 60 70 80 90
pF1KB7 EWEKMKFSEKISCVHMKRKYEAMTKLGFNVTLSLFMRNKRATDSQRNDSDNDRNRGNEVE
:::::: :::: :.:::::::::::::..:: ::::::..: : :: ::: ::::.::
CCDS14 EWEKMKASEKIIYVYMKRKYEAMTKLGFKATLPPFMRNKRVADFQGNDFDNDPNRGNQVE
80 90 100 110 120 130
100 110 120 130 140 150
pF1KB7 RPQMTFGRLQRIIPKIMPEKPAEEGSDSKGVPEASGPQNDGKKLCPPGKASSSEKIHERS
.::::::::: :.::: ::::::::.:::::::::::::.::.: : :: ..:::... :
CCDS14 HPQMTFGRLQGIFPKITPEKPAEEGNDSKGVPEASGPQNNGKQLRPSGKLNTSEKVNKTS
140 150 160 170 180 190
160 170 180
pF1KB7 GPKRGKHAWTHRLRERKQLVIYEEISDPEEDDK
::::::::::::.:::::::::::::::.:::.
CCDS14 GPKRGKHAWTHRVRERKQLVIYEEISDPQEDDE
200 210 220
>>CCDS65267.1 SSX2B gene_id:727837|Hs108|chrX (223 aa)
initn: 858 init1: 804 opt: 806 Z-score: 776.8 bits: 150.7 E(32554): 6e-37
Smith-Waterman score: 806; 73.7% identity (85.0% similar) in 167 aa overlap (1-167:1-167)
10 20 30 40 50 60
pF1KB7 MNGDDAFAKRPRDDAKASEKRSKAFDDIAKYFSKEEWEKMKFSEKISCVHMKRKYEAMTK
::::::::.:: :. :: .::::::::::::::::::: :::: :.::::::::::
CCDS65 MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKIFYVYMKRKYEAMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LGFNVTLSLFMRNKRATDSQRNDSDNDRNRGNEVERPQMTFGRLQRIIPKIMPEKPAEEG
:::..:: :: :::: : : :: ::: ::::.:::::::::::: : :::::.::::::
CCDS65 LGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFGRLQGISPKIMPKKPAEEG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 SDSKGVPEASGPQNDGKKLCPPGKASSSEKIHERSGPKRGKHAWTHRLRERKQLVIYEEI
.::. ::::::::::::.:::::: ..::::::::: ..... .:
CCDS65 NDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGNREAQEKEERRGTAHRWSSQNTHN
130 140 150 160 170 180
pF1KB7 SDPEEDDK
CCDS65 IGRFSLSTSMGAVHGTPKTITHNRDPKGGNMPGPTDCVRENSW
190 200 210 220
188 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 07:56:09 2016 done: Fri Nov 4 07:56:09 2016
Total Scan time: 2.090 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]