FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7451, 416 aa
  1>>>pF1KB7451 416 - 416 aa - 416 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.2468+/-0.000675; mu= 6.2020+/- 0.041
 mean_var=161.4920+/-32.546, 0's: 0 Z-trim(116.6): 2  B-trim: 0 in 0/53
 Lambda= 0.100925
 statistics sampled from 17255 (17257) to 17255 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.815), E-opt: 0.2 (0.53), width:  16
 Scan time:  3.690

The best scores are:                                      opt bits E(32554)
CCDS47048.1 BEND4 gene_id:389206|Hs108|chr4        ( 534) 2466 370.1 2.8e-102


>>CCDS47048.1 BEND4 gene_id:389206|Hs108|chr4             (534 aa)
 initn: 2463 init1: 2463 opt: 2466  Z-score: 1949.8  bits: 370.1 E(32554): 2.8e-102
Smith-Waterman score: 2466; 96.4% identity (97.4% similar) in 387 aa overlap (5-384:76-462)

                                         10               20       
pF1KB7                           MQGAPRARFGSRT--PP-----AAAASSSSPSCT
                                     :  .: ...  ::     ::::::::::::
CCDS47 LVELPHVRAPPPPPPPFAPHAAVSISSSEPPPQQFQAQSSYPPGPGRAAAAASSSSPSCT
          50        60        70        80        90       100     

        30        40        50        60        70        80       
pF1KB7 PATSQGHLRTPAQPPPASPAASSSSSFAAVVRYGPGAAAAAGTGGTGSDSASLELSAESR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 PATSQGHLRTPAQPPPASPAASSSSSFAAVVRYGPGAAAAAGTGGTGSDSASLELSAESR
         110       120       130       140       150       160     

        90       100       110       120       130       140       
pF1KB7 MILDAFAQQCSRVLSLLNCGGKLLDSNHSQSMISCVKQEGSSYNERQEHCHIGKGVHSQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MILDAFAQQCSRVLSLLNCGGKLLDSNHSQSMISCVKQEGSSYNERQEHCHIGKGVHSQT
         170       180       190       200       210       220     

       150       160       170       180       190       200       
pF1KB7 SDNVDIEMQYMQRKQQTSAFLRVFTDSLQNYLLSGSFPTPNPSSASEYGHLADVDPLSTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 SDNVDIEMQYMQRKQQTSAFLRVFTDSLQNYLLSGSFPTPNPSSASEYGHLADVDPLSTS
         230       240       250       260       270       280     

       210       220       230       240       250       260       
pF1KB7 PVHTLGGWTSPATSESHGHPSSSTLPEEEEEEDEEGYCPRCQELEQEVISLQQENEELRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 PVHTLGGWTSPATSESHGHPSSSTLPEEEEEEDEEGYCPRCQELEQEVISLQQENEELRR
         290       300       310       320       330       340     

       270       280       290       300       310       320       
pF1KB7 KLESIPVPCQTVLDYLKMVLQHHNQLLIPQPADQPTEGSKQLLNNYPVYITSKQWDEAVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 KLESIPVPCQTVLDYLKMVLQHHNQLLIPQPADQPTEGSKQLLNNYPVYITSKQWDEAVN
         350       360       370       380       390       400     

       330       340       350       360       370       380       
pF1KB7 SSKKDGRRLLRYLIRFVFTTDELKYSCGLGKRKRSVQSGETGPERRPLDPVKVTCLRGTA
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::   
CCDS47 SSKKDGRRLLRYLIRFVFTTDELKYSCGLGKRKRSVQSGETGPERRPLDPVKVTCLREFI
         410       420       430       440       450       460     

       390       400       410                                     
pF1KB7 SFRSVSPSVISFHRIGCGSPRTSVQPSVF                               
                                                                   
CCDS47 RMHCTSNPDWWMPSEEQINKVFSDAVGHARQGRAVGTFLHNGGSFYEGIDHQASQDEVFN
         470       480       490       500       510       520     




416 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 07:57:27 2016 done: Fri Nov  4 07:57:28 2016
 Total Scan time:  3.690 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]