FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7502, 236 aa
  1>>>pF1KB7502 236 - 236 aa - 236 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2359+/-0.00101; mu= 14.6480+/- 0.062
 mean_var=79.1954+/-16.426, 0's: 0 Z-trim(105.4): 70  B-trim: 295 in 1/49
 Lambda= 0.144120
 statistics sampled from 8338 (8406) to 8338 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.639), E-opt: 0.2 (0.258), width:  16
 Scan time:  2.200

The best scores are:                                      opt bits E(32554)
CCDS3001.1 RABL3 gene_id:285282|Hs108|chr3         ( 236) 1561 334.1 4.8e-92


>>CCDS3001.1 RABL3 gene_id:285282|Hs108|chr3              (236 aa)
 initn: 1561 init1: 1561 opt: 1561  Z-score: 1766.0  bits: 334.1 E(32554): 4.8e-92
Smith-Waterman score: 1561; 100.0% identity (100.0% similar) in 236 aa overlap (1-236:1-236)

               10        20        30        40        50        60
pF1KB7 MASLDRVKVLVLGDSGVGKSSLVHLLCQNQVLGNPSWTVGCSVDVRVHDYKEGTPEEKTY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MASLDRVKVLVLGDSGVGKSSLVHLLCQNQVLGNPSWTVGCSVDVRVHDYKEGTPEEKTY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 YIELWDVGGSVGSASSVKSTRAVFYNSVNGIIFVHDLTNKKSSQNLRRWSLEALNRDLVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 YIELWDVGGSVGSASSVKSTRAVFYNSVNGIIFVHDLTNKKSSQNLRRWSLEALNRDLVP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 TGVLVTNGDYDQEQFADNQIPLLVIGTKLDQIHETKRHEVLTRTAFLAEDFNPEEINLDC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 TGVLVTNGDYDQEQFADNQIPLLVIGTKLDQIHETKRHEVLTRTAFLAEDFNPEEINLDC
              130       140       150       160       170       180

              190       200       210       220       230      
pF1KB7 TNPRYLAAGSSNAVKLSRFFDKVIEKRYFLREGNQIPGFPDRKRFGAGTLKSLHYD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 TNPRYLAAGSSNAVKLSRFFDKVIEKRYFLREGNQIPGFPDRKRFGAGTLKSLHYD
              190       200       210       220       230      




236 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 07:59:49 2016 done: Fri Nov  4 07:59:49 2016
 Total Scan time:  2.200 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]