FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7503, 76 aa
  1>>>pF1KB7503 76 - 76 aa - 76 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1259+/-0.000297; mu= 10.0186+/- 0.019
 mean_var=77.3575+/-15.095, 0's: 0 Z-trim(118.0): 1  B-trim: 19 in 1/55
 Lambda= 0.145822
 statistics sampled from 30569 (30570) to 30569 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.736), E-opt: 0.2 (0.358), width:  16
 Scan time:  3.880

The best scores are:                                      opt bits E(85289)
NP_001528 (OMIM: 604553) heat shock factor-binding (  76)  473 107.5 2.1e-24


>>NP_001528 (OMIM: 604553) heat shock factor-binding pro  (76 aa)
 initn: 473 init1: 473 opt: 473  Z-score: 559.2  bits: 107.5 E(85289): 2.1e-24
Smith-Waterman score: 473; 100.0% identity (100.0% similar) in 76 aa overlap (1-76:1-76)

               10        20        30        40        50        60
pF1KB7 MAETDPKTVQDLTSVVQTLLQQMQDKFQTMSDQIIGRIDDMSSRIDDLEKNIADLMTQAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAETDPKTVQDLTSVVQTLLQQMQDKFQTMSDQIIGRIDDMSSRIDDLEKNIADLMTQAG
               10        20        30        40        50        60

               70      
pF1KB7 VEELESENKIPATQKS
       ::::::::::::::::
NP_001 VEELESENKIPATQKS
               70      




76 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 08:13:28 2016 done: Fri Nov  4 08:13:29 2016
 Total Scan time:  3.880 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]