FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7505, 98 aa
  1>>>pF1KB7505 98 - 98 aa - 98 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3703+/-0.000281; mu= 5.4092+/- 0.018
 mean_var=92.3853+/-17.995, 0's: 0 Z-trim(119.7): 9  B-trim: 0 in 0/55
 Lambda= 0.133436
 statistics sampled from 33978 (33987) to 33978 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.742), E-opt: 0.2 (0.398), width:  16
 Scan time:  4.760

The best scores are:                                      opt bits E(85289)
NP_006040 (OMIM: 605979) snRNA-activating protein  (  98)  598 123.8 4.3e-29
NP_001316544 (OMIM: 605979) snRNA-activating prote (  98)  598 123.8 4.3e-29
NP_001316543 (OMIM: 605979) snRNA-activating prote (  60)  373 80.4 3.1e-16
NP_001316542 (OMIM: 605979) snRNA-activating prote (  68)  227 52.3 9.9e-08


>>NP_006040 (OMIM: 605979) snRNA-activating protein comp  (98 aa)
 initn: 598 init1: 598 opt: 598  Z-score: 643.3  bits: 123.8 E(85289): 4.3e-29
Smith-Waterman score: 598; 100.0% identity (100.0% similar) in 98 aa overlap (1-98:1-98)

               10        20        30        40        50        60
pF1KB7 MLSRLQELRKEEETLLRLKAALHDQLNRLKVEELALQSMISSRRGDEMLSSHTVPEQSHD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MLSRLQELRKEEETLLRLKAALHDQLNRLKVEELALQSMISSRRGDEMLSSHTVPEQSHD
               10        20        30        40        50        60

               70        80        90        
pF1KB7 MLVHVDNEASINQTTLELSTKSHVTEEEEEEEEEESDS
       ::::::::::::::::::::::::::::::::::::::
NP_006 MLVHVDNEASINQTTLELSTKSHVTEEEEEEEEEESDS
               70        80        90        

>>NP_001316544 (OMIM: 605979) snRNA-activating protein c  (98 aa)
 initn: 598 init1: 598 opt: 598  Z-score: 643.3  bits: 123.8 E(85289): 4.3e-29
Smith-Waterman score: 598; 100.0% identity (100.0% similar) in 98 aa overlap (1-98:1-98)

               10        20        30        40        50        60
pF1KB7 MLSRLQELRKEEETLLRLKAALHDQLNRLKVEELALQSMISSRRGDEMLSSHTVPEQSHD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLSRLQELRKEEETLLRLKAALHDQLNRLKVEELALQSMISSRRGDEMLSSHTVPEQSHD
               10        20        30        40        50        60

               70        80        90        
pF1KB7 MLVHVDNEASINQTTLELSTKSHVTEEEEEEEEEESDS
       ::::::::::::::::::::::::::::::::::::::
NP_001 MLVHVDNEASINQTTLELSTKSHVTEEEEEEEEEESDS
               70        80        90        

>>NP_001316543 (OMIM: 605979) snRNA-activating protein c  (60 aa)
 initn: 373 init1: 373 opt: 373  Z-score: 412.5  bits: 80.4 E(85289): 3.1e-16
Smith-Waterman score: 373; 100.0% identity (100.0% similar) in 60 aa overlap (39-98:1-60)

       10        20        30        40        50        60        
pF1KB7 RKEEETLLRLKAALHDQLNRLKVEELALQSMISSRRGDEMLSSHTVPEQSHDMLVHVDNE
                                     ::::::::::::::::::::::::::::::
NP_001                               MISSRRGDEMLSSHTVPEQSHDMLVHVDNE
                                             10        20        30

       70        80        90        
pF1KB7 ASINQTTLELSTKSHVTEEEEEEEEEESDS
       ::::::::::::::::::::::::::::::
NP_001 ASINQTTLELSTKSHVTEEEEEEEEEESDS
               40        50        60

>>NP_001316542 (OMIM: 605979) snRNA-activating protein c  (68 aa)
 initn: 395 init1: 227 opt: 227  Z-score: 259.8  bits: 52.3 E(85289): 9.9e-08
Smith-Waterman score: 338; 69.4% identity (69.4% similar) in 98 aa overlap (1-98:1-68)

               10        20        30        40        50        60
pF1KB7 MLSRLQELRKEEETLLRLKAALHDQLNRLKVEELALQSMISSRRGDEMLSSHTVPEQSHD
       ::::::::::::::::::::::::::::::                              
NP_001 MLSRLQELRKEEETLLRLKAALHDQLNRLK------------------------------
               10        20        30                              

               70        80        90        
pF1KB7 MLVHVDNEASINQTTLELSTKSHVTEEEEEEEEEESDS
       ::::::::::::::::::::::::::::::::::::::
NP_001 MLVHVDNEASINQTTLELSTKSHVTEEEEEEEEEESDS
               40        50        60        




98 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 08:14:08 2016 done: Fri Nov  4 08:14:08 2016
 Total Scan time:  4.760 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]