FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7507, 109 aa
  1>>>pF1KB7507 109 - 109 aa - 109 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2657+/-0.000795; mu= 9.1127+/- 0.048
 mean_var=47.9255+/- 9.604, 0's: 0 Z-trim(104.7): 11  B-trim: 0 in 0/51
 Lambda= 0.185264
 statistics sampled from 8020 (8025) to 8020 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.649), E-opt: 0.2 (0.247), width:  16
 Scan time:  1.430

The best scores are:                                      opt bits E(32554)
CCDS10173.1 GTF2A2 gene_id:2958|Hs108|chr15        ( 109)  695 193.1 2.9e-50


>>CCDS10173.1 GTF2A2 gene_id:2958|Hs108|chr15             (109 aa)
 initn: 695 init1: 695 opt: 695  Z-score: 1016.0  bits: 193.1 E(32554): 2.9e-50
Smith-Waterman score: 695; 100.0% identity (100.0% similar) in 109 aa overlap (1-109:1-109)

               10        20        30        40        50        60
pF1KB7 MAYQLYRNTTLGNSLQESLDELIQSQQITPQLALQVLLQFDKAINAALAQRVRNRVNFRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MAYQLYRNTTLGNSLQESLDELIQSQQITPQLALQVLLQFDKAINAALAQRVRNRVNFRG
               10        20        30        40        50        60

               70        80        90       100         
pF1KB7 SLNTYRFCDNVWTFVLNDVEFREVTELIKVDKVKIVACDGKNTGSNTTE
       :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SLNTYRFCDNVWTFVLNDVEFREVTELIKVDKVKIVACDGKNTGSNTTE
               70        80        90       100         




109 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 08:15:19 2016 done: Fri Nov  4 08:15:20 2016
 Total Scan time:  1.430 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]