FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7507, 109 aa
  1>>>pF1KB7507 109 - 109 aa - 109 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8349+/-0.000353; mu= 11.5458+/- 0.022
 mean_var=47.0094+/- 9.681, 0's: 0 Z-trim(111.5): 13  B-trim: 23 in 1/52
 Lambda= 0.187060
 statistics sampled from 20156 (20164) to 20156 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.633), E-opt: 0.2 (0.236), width:  16
 Scan time:  4.260

The best scores are:                                      opt bits E(85289)
NP_001307859 (OMIM: 600519) transcription initiati ( 109)  695 194.8 2.4e-50
NP_001307858 (OMIM: 600519) transcription initiati ( 109)  695 194.8 2.4e-50
NP_004483 (OMIM: 600519) transcription initiation  ( 109)  695 194.8 2.4e-50


>>NP_001307859 (OMIM: 600519) transcription initiation f  (109 aa)
 initn: 695 init1: 695 opt: 695  Z-score: 1025.0  bits: 194.8 E(85289): 2.4e-50
Smith-Waterman score: 695; 100.0% identity (100.0% similar) in 109 aa overlap (1-109:1-109)

               10        20        30        40        50        60
pF1KB7 MAYQLYRNTTLGNSLQESLDELIQSQQITPQLALQVLLQFDKAINAALAQRVRNRVNFRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAYQLYRNTTLGNSLQESLDELIQSQQITPQLALQVLLQFDKAINAALAQRVRNRVNFRG
               10        20        30        40        50        60

               70        80        90       100         
pF1KB7 SLNTYRFCDNVWTFVLNDVEFREVTELIKVDKVKIVACDGKNTGSNTTE
       :::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLNTYRFCDNVWTFVLNDVEFREVTELIKVDKVKIVACDGKNTGSNTTE
               70        80        90       100         

>>NP_001307858 (OMIM: 600519) transcription initiation f  (109 aa)
 initn: 695 init1: 695 opt: 695  Z-score: 1025.0  bits: 194.8 E(85289): 2.4e-50
Smith-Waterman score: 695; 100.0% identity (100.0% similar) in 109 aa overlap (1-109:1-109)

               10        20        30        40        50        60
pF1KB7 MAYQLYRNTTLGNSLQESLDELIQSQQITPQLALQVLLQFDKAINAALAQRVRNRVNFRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAYQLYRNTTLGNSLQESLDELIQSQQITPQLALQVLLQFDKAINAALAQRVRNRVNFRG
               10        20        30        40        50        60

               70        80        90       100         
pF1KB7 SLNTYRFCDNVWTFVLNDVEFREVTELIKVDKVKIVACDGKNTGSNTTE
       :::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLNTYRFCDNVWTFVLNDVEFREVTELIKVDKVKIVACDGKNTGSNTTE
               70        80        90       100         

>>NP_004483 (OMIM: 600519) transcription initiation fact  (109 aa)
 initn: 695 init1: 695 opt: 695  Z-score: 1025.0  bits: 194.8 E(85289): 2.4e-50
Smith-Waterman score: 695; 100.0% identity (100.0% similar) in 109 aa overlap (1-109:1-109)

               10        20        30        40        50        60
pF1KB7 MAYQLYRNTTLGNSLQESLDELIQSQQITPQLALQVLLQFDKAINAALAQRVRNRVNFRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MAYQLYRNTTLGNSLQESLDELIQSQQITPQLALQVLLQFDKAINAALAQRVRNRVNFRG
               10        20        30        40        50        60

               70        80        90       100         
pF1KB7 SLNTYRFCDNVWTFVLNDVEFREVTELIKVDKVKIVACDGKNTGSNTTE
       :::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 SLNTYRFCDNVWTFVLNDVEFREVTELIKVDKVKIVACDGKNTGSNTTE
               70        80        90       100         




109 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 08:15:20 2016 done: Fri Nov  4 08:15:21 2016
 Total Scan time:  4.260 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]