FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7509, 112 aa
  1>>>pF1KB7509 112 - 112 aa - 112 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8633+/-0.000665; mu= 11.0307+/- 0.040
 mean_var=44.7969+/- 8.864, 0's: 0 Z-trim(107.6): 12  B-trim: 0 in 0/51
 Lambda= 0.191624
 statistics sampled from 9662 (9668) to 9662 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.707), E-opt: 0.2 (0.297), width:  16
 Scan time:  1.490

The best scores are:                                      opt bits E(32554)
CCDS34910.1 TCEB1 gene_id:6921|Hs108|chr8          ( 112)  745 212.8 3.7e-56
CCDS56539.1 TCEB1 gene_id:6921|Hs108|chr8          (  96)  625 179.6 3.1e-46


>>CCDS34910.1 TCEB1 gene_id:6921|Hs108|chr8               (112 aa)
 initn: 745 init1: 745 opt: 745  Z-score: 1121.8  bits: 212.8 E(32554): 3.7e-56
Smith-Waterman score: 745; 100.0% identity (100.0% similar) in 112 aa overlap (1-112:1-112)

               10        20        30        40        50        60
pF1KB7 MDGEEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MDGEEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEV
               10        20        30        40        50        60

               70        80        90       100       110  
pF1KB7 NFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 NFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC
               70        80        90       100       110  

>>CCDS56539.1 TCEB1 gene_id:6921|Hs108|chr8               (96 aa)
 initn: 625 init1: 625 opt: 625  Z-score: 943.6  bits: 179.6 E(32554): 3.1e-46
Smith-Waterman score: 625; 100.0% identity (100.0% similar) in 96 aa overlap (17-112:1-96)

               10        20        30        40        50        60
pF1KB7 MDGEEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEV
                       ::::::::::::::::::::::::::::::::::::::::::::
CCDS56                 MYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEV
                               10        20        30        40    

               70        80        90       100       110  
pF1KB7 NFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 NFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC
           50        60        70        80        90      




112 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 08:16:53 2016 done: Fri Nov  4 08:16:53 2016
 Total Scan time:  1.490 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]