Result of FASTA (omim) for
pF1KB7509
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7509, 112 aa
1>>>pF1KB7509 112 - 112 aa - 112 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.3225+/-0.000308; mu= 14.5053+/- 0.019
mean_var=46.9633+/- 9.358, 0's: 0 Z-trim(114.4): 20 B-trim: 0 in 0/52
Lambda= 0.187152
statistics sampled from 24234 (24254) to 24234 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.692), E-opt: 0.2 (0.284), width: 16
Scan time: 4.350
The best scores are: opt bits E(85289)
NP_001191791 (OMIM: 600788) transcription elongati ( 112) 745 208.0 2.6e-54
NP_001191790 (OMIM: 600788) transcription elongati ( 112) 745 208.0 2.6e-54
NP_001191787 (OMIM: 600788) transcription elongati ( 112) 745 208.0 2.6e-54
XP_011515883 (OMIM: 600788) PREDICTED: transcripti ( 112) 745 208.0 2.6e-54
NP_001191786 (OMIM: 600788) transcription elongati ( 112) 745 208.0 2.6e-54
NP_001191788 (OMIM: 600788) transcription elongati ( 112) 745 208.0 2.6e-54
XP_011515882 (OMIM: 600788) PREDICTED: transcripti ( 112) 745 208.0 2.6e-54
NP_001191789 (OMIM: 600788) transcription elongati ( 112) 745 208.0 2.6e-54
NP_005639 (OMIM: 600788) transcription elongation ( 112) 745 208.0 2.6e-54
NP_001191792 (OMIM: 600788) transcription elongati ( 96) 625 175.5 1.3e-44
NP_001191793 (OMIM: 600788) transcription elongati ( 96) 625 175.5 1.3e-44
>>NP_001191791 (OMIM: 600788) transcription elongation f (112 aa)
initn: 745 init1: 745 opt: 745 Z-score: 1096.0 bits: 208.0 E(85289): 2.6e-54
Smith-Waterman score: 745; 100.0% identity (100.0% similar) in 112 aa overlap (1-112:1-112)
10 20 30 40 50 60
pF1KB7 MDGEEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDGEEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEV
10 20 30 40 50 60
70 80 90 100 110
pF1KB7 NFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC
::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC
70 80 90 100 110
>>NP_001191790 (OMIM: 600788) transcription elongation f (112 aa)
initn: 745 init1: 745 opt: 745 Z-score: 1096.0 bits: 208.0 E(85289): 2.6e-54
Smith-Waterman score: 745; 100.0% identity (100.0% similar) in 112 aa overlap (1-112:1-112)
10 20 30 40 50 60
pF1KB7 MDGEEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDGEEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEV
10 20 30 40 50 60
70 80 90 100 110
pF1KB7 NFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC
::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC
70 80 90 100 110
>>NP_001191787 (OMIM: 600788) transcription elongation f (112 aa)
initn: 745 init1: 745 opt: 745 Z-score: 1096.0 bits: 208.0 E(85289): 2.6e-54
Smith-Waterman score: 745; 100.0% identity (100.0% similar) in 112 aa overlap (1-112:1-112)
10 20 30 40 50 60
pF1KB7 MDGEEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDGEEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEV
10 20 30 40 50 60
70 80 90 100 110
pF1KB7 NFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC
::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC
70 80 90 100 110
>>XP_011515883 (OMIM: 600788) PREDICTED: transcription e (112 aa)
initn: 745 init1: 745 opt: 745 Z-score: 1096.0 bits: 208.0 E(85289): 2.6e-54
Smith-Waterman score: 745; 100.0% identity (100.0% similar) in 112 aa overlap (1-112:1-112)
10 20 30 40 50 60
pF1KB7 MDGEEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MDGEEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEV
10 20 30 40 50 60
70 80 90 100 110
pF1KB7 NFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC
::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC
70 80 90 100 110
>>NP_001191786 (OMIM: 600788) transcription elongation f (112 aa)
initn: 745 init1: 745 opt: 745 Z-score: 1096.0 bits: 208.0 E(85289): 2.6e-54
Smith-Waterman score: 745; 100.0% identity (100.0% similar) in 112 aa overlap (1-112:1-112)
10 20 30 40 50 60
pF1KB7 MDGEEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDGEEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEV
10 20 30 40 50 60
70 80 90 100 110
pF1KB7 NFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC
::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC
70 80 90 100 110
>>NP_001191788 (OMIM: 600788) transcription elongation f (112 aa)
initn: 745 init1: 745 opt: 745 Z-score: 1096.0 bits: 208.0 E(85289): 2.6e-54
Smith-Waterman score: 745; 100.0% identity (100.0% similar) in 112 aa overlap (1-112:1-112)
10 20 30 40 50 60
pF1KB7 MDGEEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDGEEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEV
10 20 30 40 50 60
70 80 90 100 110
pF1KB7 NFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC
::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC
70 80 90 100 110
>>XP_011515882 (OMIM: 600788) PREDICTED: transcription e (112 aa)
initn: 745 init1: 745 opt: 745 Z-score: 1096.0 bits: 208.0 E(85289): 2.6e-54
Smith-Waterman score: 745; 100.0% identity (100.0% similar) in 112 aa overlap (1-112:1-112)
10 20 30 40 50 60
pF1KB7 MDGEEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MDGEEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEV
10 20 30 40 50 60
70 80 90 100 110
pF1KB7 NFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC
::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC
70 80 90 100 110
>>NP_001191789 (OMIM: 600788) transcription elongation f (112 aa)
initn: 745 init1: 745 opt: 745 Z-score: 1096.0 bits: 208.0 E(85289): 2.6e-54
Smith-Waterman score: 745; 100.0% identity (100.0% similar) in 112 aa overlap (1-112:1-112)
10 20 30 40 50 60
pF1KB7 MDGEEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDGEEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEV
10 20 30 40 50 60
70 80 90 100 110
pF1KB7 NFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC
::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC
70 80 90 100 110
>>NP_005639 (OMIM: 600788) transcription elongation fact (112 aa)
initn: 745 init1: 745 opt: 745 Z-score: 1096.0 bits: 208.0 E(85289): 2.6e-54
Smith-Waterman score: 745; 100.0% identity (100.0% similar) in 112 aa overlap (1-112:1-112)
10 20 30 40 50 60
pF1KB7 MDGEEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MDGEEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEV
10 20 30 40 50 60
70 80 90 100 110
pF1KB7 NFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC
::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 NFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC
70 80 90 100 110
>>NP_001191792 (OMIM: 600788) transcription elongation f (96 aa)
initn: 625 init1: 625 opt: 625 Z-score: 921.9 bits: 175.5 E(85289): 1.3e-44
Smith-Waterman score: 625; 100.0% identity (100.0% similar) in 96 aa overlap (17-112:1-96)
10 20 30 40 50 60
pF1KB7 MDGEEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEV
::::::::::::::::::::::::::::::::::::::::::::
NP_001 MYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEV
10 20 30 40
70 80 90 100 110
pF1KB7 NFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC
::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC
50 60 70 80 90
112 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 08:16:54 2016 done: Fri Nov 4 08:16:54 2016
Total Scan time: 4.350 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]