FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7510, 242 aa
  1>>>pF1KB7510 242 - 242 aa - 242 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7190+/-0.000783; mu= 11.3628+/- 0.047
 mean_var=57.6094+/-11.533, 0's: 0 Z-trim(105.7): 25  B-trim: 0 in 0/50
 Lambda= 0.168977
 statistics sampled from 8560 (8568) to 8560 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.651), E-opt: 0.2 (0.263), width:  16
 Scan time:  2.260

The best scores are:                                      opt bits E(32554)
CCDS7852.1 HTATIP2 gene_id:10553|Hs108|chr11       ( 242) 1584 394.3 3.8e-110
CCDS44553.1 HTATIP2 gene_id:10553|Hs108|chr11      ( 276) 1584 394.3 4.3e-110
CCDS53613.1 HTATIP2 gene_id:10553|Hs108|chr11      ( 133)  649 166.4 8.7e-42


>>CCDS7852.1 HTATIP2 gene_id:10553|Hs108|chr11            (242 aa)
 initn: 1584 init1: 1584 opt: 1584  Z-score: 2091.0  bits: 394.3 E(32554): 3.8e-110
Smith-Waterman score: 1584; 99.6% identity (99.6% similar) in 242 aa overlap (1-242:1-242)

               10        20        30        40        50        60
pF1KB7 MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 AGGCKHFNLLSSKGADKSSNFLYLQVKGEVEAKVEELKFDRYSVFRPGVLLCDRQESRPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 AGGCKHFNLLSSKGADKSSNFLYLQVKGEVEAKVEELKFDRYSVFRPGVLLCDRQESRPG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 EWLVRKFFGSLPDSWARGHSVPVVTVVRAMLNNVVRPRDKQMELLENKAIHDLGKAHGSL
       :::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::
CCDS78 EWLVRKFFGSLPDSWASGHSVPVVTVVRAMLNNVVRPRDKQMELLENKAIHDLGKAHGSL
              190       200       210       220       230       240

         
pF1KB7 KP
       ::
CCDS78 KP
         

>>CCDS44553.1 HTATIP2 gene_id:10553|Hs108|chr11           (276 aa)
 initn: 1584 init1: 1584 opt: 1584  Z-score: 2090.0  bits: 394.3 E(32554): 4.3e-110
Smith-Waterman score: 1584; 99.6% identity (99.6% similar) in 242 aa overlap (1-242:35-276)

                                             10        20        30
pF1KB7                               MAETEALSKLREDFRMQNKSVFILGASGET
                                     ::::::::::::::::::::::::::::::
CCDS44 AALSAAAAAALAAALLLLRREDPGPGAGPSMAETEALSKLREDFRMQNKSVFILGASGET
           10        20        30        40        50        60    

               40        50        60        70        80        90
pF1KB7 GRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 GRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFC
           70        80        90       100       110       120    

              100       110       120       130       140       150
pF1KB7 CLGTTRGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGADKSSNFLYLQVKGEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 CLGTTRGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGADKSSNFLYLQVKGEV
          130       140       150       160       170       180    

              160       170       180       190       200       210
pF1KB7 EAKVEELKFDRYSVFRPGVLLCDRQESRPGEWLVRKFFGSLPDSWARGHSVPVVTVVRAM
       :::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::
CCDS44 EAKVEELKFDRYSVFRPGVLLCDRQESRPGEWLVRKFFGSLPDSWASGHSVPVVTVVRAM
          190       200       210       220       230       240    

              220       230       240  
pF1KB7 LNNVVRPRDKQMELLENKAIHDLGKAHGSLKP
       ::::::::::::::::::::::::::::::::
CCDS44 LNNVVRPRDKQMELLENKAIHDLGKAHGSLKP
          250       260       270      

>>CCDS53613.1 HTATIP2 gene_id:10553|Hs108|chr11           (133 aa)
 initn: 649 init1: 649 opt: 649  Z-score: 863.7  bits: 166.4 E(32554): 8.7e-42
Smith-Waterman score: 649; 100.0% identity (100.0% similar) in 101 aa overlap (1-101:1-101)

               10        20        30        40        50        60
pF1KB7 MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAK
       :::::::::::::::::::::::::::::::::::::::::                   
CCDS53 AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGAVRKAYALFPFCWPVISRIL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 AGGCKHFNLLSSKGADKSSNFLYLQVKGEVEAKVEELKFDRYSVFRPGVLLCDRQESRPG
                                                                   
CCDS53 FLLTLFLCACCNA                                               
              130                                                  




242 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 08:17:30 2016 done: Fri Nov  4 08:17:31 2016
 Total Scan time:  2.260 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]