Result of FASTA (omim) for
pF1KB7510
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7510, 242 aa
1>>>pF1KB7510 242 - 242 aa - 242 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4419+/-0.000366; mu= 13.0726+/- 0.023
mean_var=63.7172+/-12.741, 0's: 0 Z-trim(112.1): 26 B-trim: 0 in 0/55
Lambda= 0.160674
statistics sampled from 20892 (20898) to 20892 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.633), E-opt: 0.2 (0.245), width: 16
Scan time: 6.680
The best scores are: opt bits E(85289)
NP_006401 (OMIM: 605628) oxidoreductase HTATIP2 is ( 242) 1584 375.9 3.4e-104
NP_001091991 (OMIM: 605628) oxidoreductase HTATIP2 ( 242) 1584 375.9 3.4e-104
NP_001091992 (OMIM: 605628) oxidoreductase HTATIP2 ( 242) 1584 375.9 3.4e-104
NP_001091990 (OMIM: 605628) oxidoreductase HTATIP2 ( 276) 1584 375.9 3.8e-104
NP_001091993 (OMIM: 605628) oxidoreductase HTATIP2 ( 133) 649 159.1 3.6e-39
>>NP_006401 (OMIM: 605628) oxidoreductase HTATIP2 isofor (242 aa)
initn: 1584 init1: 1584 opt: 1584 Z-score: 1991.6 bits: 375.9 E(85289): 3.4e-104
Smith-Waterman score: 1584; 99.6% identity (99.6% similar) in 242 aa overlap (1-242:1-242)
10 20 30 40 50 60
pF1KB7 MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 AGGCKHFNLLSSKGADKSSNFLYLQVKGEVEAKVEELKFDRYSVFRPGVLLCDRQESRPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 AGGCKHFNLLSSKGADKSSNFLYLQVKGEVEAKVEELKFDRYSVFRPGVLLCDRQESRPG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 EWLVRKFFGSLPDSWARGHSVPVVTVVRAMLNNVVRPRDKQMELLENKAIHDLGKAHGSL
:::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::
NP_006 EWLVRKFFGSLPDSWASGHSVPVVTVVRAMLNNVVRPRDKQMELLENKAIHDLGKAHGSL
190 200 210 220 230 240
pF1KB7 KP
::
NP_006 KP
>>NP_001091991 (OMIM: 605628) oxidoreductase HTATIP2 iso (242 aa)
initn: 1584 init1: 1584 opt: 1584 Z-score: 1991.6 bits: 375.9 E(85289): 3.4e-104
Smith-Waterman score: 1584; 99.6% identity (99.6% similar) in 242 aa overlap (1-242:1-242)
10 20 30 40 50 60
pF1KB7 MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 AGGCKHFNLLSSKGADKSSNFLYLQVKGEVEAKVEELKFDRYSVFRPGVLLCDRQESRPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AGGCKHFNLLSSKGADKSSNFLYLQVKGEVEAKVEELKFDRYSVFRPGVLLCDRQESRPG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 EWLVRKFFGSLPDSWARGHSVPVVTVVRAMLNNVVRPRDKQMELLENKAIHDLGKAHGSL
:::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::
NP_001 EWLVRKFFGSLPDSWASGHSVPVVTVVRAMLNNVVRPRDKQMELLENKAIHDLGKAHGSL
190 200 210 220 230 240
pF1KB7 KP
::
NP_001 KP
>>NP_001091992 (OMIM: 605628) oxidoreductase HTATIP2 iso (242 aa)
initn: 1584 init1: 1584 opt: 1584 Z-score: 1991.6 bits: 375.9 E(85289): 3.4e-104
Smith-Waterman score: 1584; 99.6% identity (99.6% similar) in 242 aa overlap (1-242:1-242)
10 20 30 40 50 60
pF1KB7 MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 AGGCKHFNLLSSKGADKSSNFLYLQVKGEVEAKVEELKFDRYSVFRPGVLLCDRQESRPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AGGCKHFNLLSSKGADKSSNFLYLQVKGEVEAKVEELKFDRYSVFRPGVLLCDRQESRPG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 EWLVRKFFGSLPDSWARGHSVPVVTVVRAMLNNVVRPRDKQMELLENKAIHDLGKAHGSL
:::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::
NP_001 EWLVRKFFGSLPDSWASGHSVPVVTVVRAMLNNVVRPRDKQMELLENKAIHDLGKAHGSL
190 200 210 220 230 240
pF1KB7 KP
::
NP_001 KP
>>NP_001091990 (OMIM: 605628) oxidoreductase HTATIP2 iso (276 aa)
initn: 1584 init1: 1584 opt: 1584 Z-score: 1990.7 bits: 375.9 E(85289): 3.8e-104
Smith-Waterman score: 1584; 99.6% identity (99.6% similar) in 242 aa overlap (1-242:35-276)
10 20 30
pF1KB7 MAETEALSKLREDFRMQNKSVFILGASGET
::::::::::::::::::::::::::::::
NP_001 AALSAAAAAALAAALLLLRREDPGPGAGPSMAETEALSKLREDFRMQNKSVFILGASGET
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB7 GRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFC
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB7 CLGTTRGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGADKSSNFLYLQVKGEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CLGTTRGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGADKSSNFLYLQVKGEV
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB7 EAKVEELKFDRYSVFRPGVLLCDRQESRPGEWLVRKFFGSLPDSWARGHSVPVVTVVRAM
:::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::
NP_001 EAKVEELKFDRYSVFRPGVLLCDRQESRPGEWLVRKFFGSLPDSWASGHSVPVVTVVRAM
190 200 210 220 230 240
220 230 240
pF1KB7 LNNVVRPRDKQMELLENKAIHDLGKAHGSLKP
::::::::::::::::::::::::::::::::
NP_001 LNNVVRPRDKQMELLENKAIHDLGKAHGSLKP
250 260 270
>>NP_001091993 (OMIM: 605628) oxidoreductase HTATIP2 iso (133 aa)
initn: 649 init1: 649 opt: 649 Z-score: 824.3 bits: 159.1 E(85289): 3.6e-39
Smith-Waterman score: 649; 100.0% identity (100.0% similar) in 101 aa overlap (1-101:1-101)
10 20 30 40 50 60
pF1KB7 MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAK
:::::::::::::::::::::::::::::::::::::::::
NP_001 AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGAVRKAYALFPFCWPVISRIL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 AGGCKHFNLLSSKGADKSSNFLYLQVKGEVEAKVEELKFDRYSVFRPGVLLCDRQESRPG
NP_001 FLLTLFLCACCNA
130
242 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 08:17:31 2016 done: Fri Nov 4 08:17:32 2016
Total Scan time: 6.680 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]