FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7511, 125 aa
  1>>>pF1KB7511 125 - 125 aa - 125 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9665+/-0.000546; mu= 10.2647+/- 0.034
 mean_var=110.6979+/-21.954, 0's: 0 Z-trim(117.4): 35  B-trim: 0 in 0/53
 Lambda= 0.121900
 statistics sampled from 18107 (18142) to 18107 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.861), E-opt: 0.2 (0.557), width:  16
 Scan time:  1.740

The best scores are:                                      opt bits E(32554)
CCDS9843.1 BATF gene_id:10538|Hs108|chr14          ( 125)  825 153.8 2.5e-38
CCDS1508.1 BATF3 gene_id:55509|Hs108|chr1          ( 127)  327 66.3 5.9e-12


>>CCDS9843.1 BATF gene_id:10538|Hs108|chr14               (125 aa)
 initn: 825 init1: 825 opt: 825  Z-score: 801.5  bits: 153.8 E(32554): 2.5e-38
Smith-Waterman score: 825; 100.0% identity (100.0% similar) in 125 aa overlap (1-125:1-125)

               10        20        30        40        50        60
pF1KB7 MPHSSDSSDSSFSRSPPPGKQDSSDDVRRVQRREKNRIAAQKSRQRQTQKADTLHLESED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 MPHSSDSSDSSFSRSPPPGKQDSSDDVRRVQRREKNRIAAQKSRQRQTQKADTLHLESED
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 LEKQNAALRKEIKQLTEELKYFTSVLNSHEPLCSVLAASTPSPPEVVYSAHAFHQPHVSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 LEKQNAALRKEIKQLTEELKYFTSVLNSHEPLCSVLAASTPSPPEVVYSAHAFHQPHVSS
               70        80        90       100       110       120

            
pF1KB7 PRFQP
       :::::
CCDS98 PRFQP
            

>>CCDS1508.1 BATF3 gene_id:55509|Hs108|chr1               (127 aa)
 initn: 333 init1: 295 opt: 327  Z-score: 328.1  bits: 66.3 E(32554): 5.9e-12
Smith-Waterman score: 327; 54.3% identity (77.2% similar) in 92 aa overlap (16-104:25-116)

                        10        20        30        40        50 
pF1KB7          MPHSSDSSDSSFSRSPPPGKQDSSDDVRRVQRREKNRIAAQKSRQRQTQKA
                               : : .:.  :: :.:.::::::.:::.::..:::::
CCDS15 MSQGLPAAGSVLQRSVAAPGNQPQPQPQQQSPEDDDRKVRRREKNRVAAQRSRKKQTQKA
               10        20        30        40        50        60

              60        70        80        90          100        
pF1KB7 DTLHLESEDLEKQNAALRKEIKQLTEELKYFTSVLNSHEPLCSVLAAS---TPSPPEVVY
       : :: : :.::..:. ::.:: .::::::..: .:. :: .: .:      .: ::    
CCDS15 DKLHEEYESLEQENTMLRREIGKLTEELKHLTEALKEHEKMCPLLLCPMNFVPVPPRPDP
               70        80        90       100       110       120

      110       120     
pF1KB7 SAHAFHQPHVSSPRFQP
                        
CCDS15 VAGCLPR          
                        




125 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 08:18:59 2016 done: Fri Nov  4 08:19:00 2016
 Total Scan time:  1.740 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]