FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7512, 243 aa
  1>>>pF1KB7512 243 - 243 aa - 243 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.1273+/-0.000797; mu= -1.0806+/- 0.048
 mean_var=242.0844+/-56.629, 0's: 0 Z-trim(114.8): 8  B-trim: 0 in 0/50
 Lambda= 0.082431
 statistics sampled from 15401 (15403) to 15401 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.796), E-opt: 0.2 (0.473), width:  16
 Scan time:  2.660

The best scores are:                                      opt bits E(32554)
CCDS5416.1 JAZF1 gene_id:221895|Hs108|chr7         ( 243) 1643 207.3 7.5e-54


>>CCDS5416.1 JAZF1 gene_id:221895|Hs108|chr7              (243 aa)
 initn: 1643 init1: 1643 opt: 1643  Z-score: 1080.3  bits: 207.3 E(32554): 7.5e-54
Smith-Waterman score: 1643; 100.0% identity (100.0% similar) in 243 aa overlap (1-243:1-243)

               10        20        30        40        50        60
pF1KB7 MTGIAAASFFSNTCRFGGCGLHFPTLADLIEHIEDNHIDTDPRVLEKQELQQPTYVALSY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MTGIAAASFFSNTCRFGGCGLHFPTLADLIEHIEDNHIDTDPRVLEKQELQQPTYVALSY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 INRFMTDAARREQESLKKKIQPKLSLTLSSSVSRGNVSTPPRHSSGSLTPPVTPPITPSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 INRFMTDAARREQESLKKKIQPKLSLTLSSSVSRGNVSTPPRHSSGSLTPPVTPPITPSS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 SFRSSTPTGSEYDEEEVDYEESDSDESWTTESAISSEAILSSMCMNGGEEKPFACPVPGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 SFRSSTPTGSEYDEEEVDYEESDSDESWTTESAISSEAILSSMCMNGGEEKPFACPVPGC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 KKRYKNVNGIKYHAKNGHRTQIRVRKPFKCRCGKSYKTAQGLRHHTINFHPPVSAEIIRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 KKRYKNVNGIKYHAKNGHRTQIRVRKPFKCRCGKSYKTAQGLRHHTINFHPPVSAEIIRK
              190       200       210       220       230       240

          
pF1KB7 MQQ
       :::
CCDS54 MQQ
          




243 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 08:19:33 2016 done: Fri Nov  4 08:19:33 2016
 Total Scan time:  2.660 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]