FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7513, 125 aa
  1>>>pF1KB7513 125 - 125 aa - 125 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4830+/-0.000291; mu= 10.1116+/- 0.018
 mean_var=70.2964+/-14.107, 0's: 0 Z-trim(118.6): 29  B-trim: 415 in 1/53
 Lambda= 0.152971
 statistics sampled from 31614 (31643) to 31614 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.755), E-opt: 0.2 (0.371), width:  16
 Scan time:  4.590

The best scores are:                                      opt bits E(85289)
NP_006224 (OMIM: 180662) DNA-directed RNA polymera ( 125)  910 208.9 1.7e-54
NP_057394 (OMIM: 606007) DNA-directed RNA polymera ( 108)  190 50.0   1e-06


>>NP_006224 (OMIM: 180662) DNA-directed RNA polymerase I  (125 aa)
 initn: 910 init1: 910 opt: 910  Z-score: 1099.5  bits: 208.9 E(85289): 1.7e-54
Smith-Waterman score: 910; 100.0% identity (100.0% similar) in 125 aa overlap (1-125:1-125)

               10        20        30        40        50        60
pF1KB7 MEPDGTYEPGFVGIRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MEPDGTYEPGFVGIRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 EVDELTQIIADVSQDPTLPRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 EVDELTQIIADVSQDPTLPRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCG
               70        80        90       100       110       120

            
pF1KB7 HRWTE
       :::::
NP_006 HRWTE
            

>>NP_057394 (OMIM: 606007) DNA-directed RNA polymerase I  (108 aa)
 initn: 193 init1: 128 opt: 190  Z-score: 241.7  bits: 50.0 E(85289): 1e-06
Smith-Waterman score: 190; 27.3% identity (55.5% similar) in 110 aa overlap (16-125:4-108)

               10        20        30        40        50        60
pF1KB7 MEPDGTYEPGFVGIRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITH
                      ::  :.: :  .: .  :   .:: .: : ..   .   .:.   
NP_057             MLLFCPGCGNGLIVEEGQ--RCHRFACNTCPYVHNITRKV--TNRKYP
                           10          20        30          40    

               70        80        90       100       110       120
pF1KB7 EVDELTQIIADVSQDPTLPRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCG
       .. :. .... ..   ..  : .  : :: : .: :.: ..  :.. :  .: :   .::
NP_057 KLKEVDDVLGGAAAWENVDSTAES-CPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCG
           50        60         70        80        90       100   

            
pF1KB7 HRWTE
       ::: .
NP_057 HRWRD
            




125 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 08:20:10 2016 done: Fri Nov  4 08:20:11 2016
 Total Scan time:  4.590 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]