FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7515, 127 aa
  1>>>pF1KB7515 127 - 127 aa - 127 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.8219+/-0.000592; mu= 7.3808+/- 0.036
 mean_var=147.1365+/-28.987, 0's: 0 Z-trim(118.5): 30  B-trim: 2 in 1/53
 Lambda= 0.105734
 statistics sampled from 19450 (19481) to 19450 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.877), E-opt: 0.2 (0.598), width:  16
 Scan time:  1.460

The best scores are:                                      opt bits E(32554)
CCDS1508.1 BATF3 gene_id:55509|Hs108|chr1          ( 127)  867 141.6 1.2e-34


>>CCDS1508.1 BATF3 gene_id:55509|Hs108|chr1               (127 aa)
 initn: 867 init1: 867 opt: 867  Z-score: 735.4  bits: 141.6 E(32554): 1.2e-34
Smith-Waterman score: 867; 100.0% identity (100.0% similar) in 127 aa overlap (1-127:1-127)

               10        20        30        40        50        60
pF1KB7 MSQGLPAAGSVLQRSVAAPGNQPQPQPQQQSPEDDDRKVRRREKNRVAAQRSRKKQTQKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 MSQGLPAAGSVLQRSVAAPGNQPQPQPQQQSPEDDDRKVRRREKNRVAAQRSRKKQTQKA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 DKLHEEYESLEQENTMLRREIGKLTEELKHLTEALKEHEKMCPLLLCPMNFVPVPPRPDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 DKLHEEYESLEQENTMLRREIGKLTEELKHLTEALKEHEKMCPLLLCPMNFVPVPPRPDP
               70        80        90       100       110       120

              
pF1KB7 VAGCLPR
       :::::::
CCDS15 VAGCLPR
              




127 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 08:21:57 2016 done: Fri Nov  4 08:21:57 2016
 Total Scan time:  1.460 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]