Result of FASTA (ccds) for
pF1KB7518
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7518, 246 aa
1>>>pF1KB7518 246 - 246 aa - 246 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.1835+/-0.000758; mu= 11.0571+/- 0.046
mean_var=91.4455+/-17.924, 0's: 0 Z-trim(110.6): 9 B-trim: 0 in 0/51
Lambda= 0.134120
statistics sampled from 11712 (11718) to 11712 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.737), E-opt: 0.2 (0.36), width: 16
Scan time: 2.280
The best scores are: opt bits E(32554)
CCDS9805.1 MED6 gene_id:10001|Hs108|chr14 ( 246) 1657 330.1 8.5e-91
CCDS73649.1 MED6 gene_id:10001|Hs108|chr14 ( 257) 1651 328.9 2e-90
CCDS61484.1 MED6 gene_id:10001|Hs108|chr14 ( 253) 1633 325.4 2.2e-89
CCDS61483.1 MED6 gene_id:10001|Hs108|chr14 ( 181) 1065 215.5 2e-56
>>CCDS9805.1 MED6 gene_id:10001|Hs108|chr14 (246 aa)
initn: 1657 init1: 1657 opt: 1657 Z-score: 1743.6 bits: 330.1 E(32554): 8.5e-91
Smith-Waterman score: 1657; 100.0% identity (100.0% similar) in 246 aa overlap (1-246:1-246)
10 20 30 40 50 60
pF1KB7 MAAVDIRDNLLGISWVDSSWIPILNSGSVLDYFSERSNPFYDRTCNNEVVKMQRLTLEHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 MAAVDIRDNLLGISWVDSSWIPILNSGSVLDYFSERSNPFYDRTCNNEVVKMQRLTLEHL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 NQMVGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 NQMVGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 TAVHGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVRPKAKRKEEPSSIFQRQRVDAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 TAVHGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVRPKAKRKEEPSSIFQRQRVDAL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 LLDLRQKFPPKFVQLKPGEKPVPVDQTKKEAEPIPETVKPEEKETTKNVQQTVSAKGPPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 LLDLRQKFPPKFVQLKPGEKPVPVDQTKKEAEPIPETVKPEEKETTKNVQQTVSAKGPPE
190 200 210 220 230 240
pF1KB7 KRMRLQ
::::::
CCDS98 KRMRLQ
>>CCDS73649.1 MED6 gene_id:10001|Hs108|chr14 (257 aa)
initn: 1671 init1: 1651 opt: 1651 Z-score: 1737.0 bits: 328.9 E(32554): 2e-90
Smith-Waterman score: 1651; 99.6% identity (100.0% similar) in 246 aa overlap (1-246:1-246)
10 20 30 40 50 60
pF1KB7 MAAVDIRDNLLGISWVDSSWIPILNSGSVLDYFSERSNPFYDRTCNNEVVKMQRLTLEHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MAAVDIRDNLLGISWVDSSWIPILNSGSVLDYFSERSNPFYDRTCNNEVVKMQRLTLEHL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 NQMVGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 NQMVGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 TAVHGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVRPKAKRKEEPSSIFQRQRVDAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 TAVHGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVRPKAKRKEEPSSIFQRQRVDAL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 LLDLRQKFPPKFVQLKPGEKPVPVDQTKKEAEPIPETVKPEEKETTKNVQQTVSAKGPPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LLDLRQKFPPKFVQLKPGEKPVPVDQTKKEAEPIPETVKPEEKETTKNVQQTVSAKGPPE
190 200 210 220 230 240
pF1KB7 KRMRLQ
:::::.
CCDS73 KRMRLHYIILSIKINSC
250
>>CCDS61484.1 MED6 gene_id:10001|Hs108|chr14 (253 aa)
initn: 1643 init1: 874 opt: 1633 Z-score: 1718.3 bits: 325.4 E(32554): 2.2e-89
Smith-Waterman score: 1633; 97.2% identity (97.2% similar) in 253 aa overlap (1-246:1-253)
10 20 30 40 50 60
pF1KB7 MAAVDIRDNLLGISWVDSSWIPILNSGSVLDYFSERSNPFYDRTCNNEVVKMQRLTLEHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 MAAVDIRDNLLGISWVDSSWIPILNSGSVLDYFSERSNPFYDRTCNNEVVKMQRLTLEHL
10 20 30 40 50 60
70 80 90 100 110
pF1KB7 NQMVGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRV-
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 NQMVGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVS
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB7 ------LTAVHGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVRPKAKRKEEPSSIFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 LFSFYKLTAVHGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVRPKAKRKEEPSSIFQ
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB7 RQRVDALLLDLRQKFPPKFVQLKPGEKPVPVDQTKKEAEPIPETVKPEEKETTKNVQQTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 RQRVDALLLDLRQKFPPKFVQLKPGEKPVPVDQTKKEAEPIPETVKPEEKETTKNVQQTV
190 200 210 220 230 240
240
pF1KB7 SAKGPPEKRMRLQ
:::::::::::::
CCDS61 SAKGPPEKRMRLQ
250
>>CCDS61483.1 MED6 gene_id:10001|Hs108|chr14 (181 aa)
initn: 1065 init1: 1065 opt: 1065 Z-score: 1126.5 bits: 215.5 E(32554): 2e-56
Smith-Waterman score: 1065; 97.5% identity (98.1% similar) in 162 aa overlap (1-162:1-162)
10 20 30 40 50 60
pF1KB7 MAAVDIRDNLLGISWVDSSWIPILNSGSVLDYFSERSNPFYDRTCNNEVVKMQRLTLEHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 MAAVDIRDNLLGISWVDSSWIPILNSGSVLDYFSERSNPFYDRTCNNEVVKMQRLTLEHL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 NQMVGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 NQMVGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 TAVHGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVRPKAKRKEEPSSIFQRQRVDAL
::::::::::::::::::::::::::::::::::: :. ::
CCDS61 TAVHGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQAKAWRKACSSGSNKERGRTYTRNCK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 LLDLRQKFPPKFVQLKPGEKPVPVDQTKKEAEPIPETVKPEEKETTKNVQQTVSAKGPPE
CCDS61 T
246 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 08:23:45 2016 done: Fri Nov 4 08:23:46 2016
Total Scan time: 2.280 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]