FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7519, 142 aa
  1>>>pF1KB7519 142 - 142 aa - 142 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2481+/-0.0003; mu= 12.1956+/- 0.019
 mean_var=66.3052+/-13.037, 0's: 0 Z-trim(116.9): 14  B-trim: 0 in 0/52
 Lambda= 0.157507
 statistics sampled from 28426 (28435) to 28426 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.727), E-opt: 0.2 (0.333), width:  16
 Scan time:  5.170

The best scores are:                                      opt bits E(85289)
NP_004796 (OMIM: 606017) DNA-directed RNA polymera ( 142)  904 213.5 9.5e-56


>>NP_004796 (OMIM: 606017) DNA-directed RNA polymerase I  (142 aa)
 initn: 904 init1: 904 opt: 904  Z-score: 1121.8  bits: 213.5 E(85289): 9.5e-56
Smith-Waterman score: 904; 100.0% identity (100.0% similar) in 142 aa overlap (1-142:1-142)

               10        20        30        40        50        60
pF1KB7 MAAGGSDPRAGDVEEDASQLIFPKEFETAETLLNSEVHMLLEHRKQQNESAEDEQELSEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MAAGGSDPRAGDVEEDASQLIFPKEFETAETLLNSEVHMLLEHRKQQNESAEDEQELSEV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 FMKTLNYTARFSRFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 FMKTLNYTARFSRFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEG
               70        80        90       100       110       120

              130       140  
pF1KB7 RFEDEELQQILDDIQTKRSFQY
       ::::::::::::::::::::::
NP_004 RFEDEELQQILDDIQTKRSFQY
              130       140  




142 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 20:12:46 2016 done: Fri Nov  4 20:12:47 2016
 Total Scan time:  5.170 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]