FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7521, 144 aa
  1>>>pF1KB7521 144 - 144 aa - 144 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7003+/-0.000687; mu= 8.9019+/- 0.042
 mean_var=60.4995+/-11.583, 0's: 0 Z-trim(109.0): 16  B-trim: 0 in 0/51
 Lambda= 0.164891
 statistics sampled from 10597 (10601) to 10597 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.729), E-opt: 0.2 (0.326), width:  16
 Scan time:  1.840

The best scores are:                                      opt bits E(32554)
CCDS8711.1 MED21 gene_id:9412|Hs108|chr12          ( 144)  914 225.4 9.7e-60


>>CCDS8711.1 MED21 gene_id:9412|Hs108|chr12               (144 aa)
 initn: 914 init1: 914 opt: 914  Z-score: 1186.0  bits: 225.4 E(32554): 9.7e-60
Smith-Waterman score: 914; 100.0% identity (100.0% similar) in 144 aa overlap (1-144:1-144)

               10        20        30        40        50        60
pF1KB7 MADRLTQLQDAVNSLADQFCNAIGVLQQCGPPASFNNIQTAINKDQPANPTEEYAQLFAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 MADRLTQLQDAVNSLADQFCNAIGVLQQCGPPASFNNIQTAINKDQPANPTEEYAQLFAA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 LIARTAKDIDVLIDSLPSEESTAALQAASLYKLEEENHEAATCLEDVVYRGDMLLEKIQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 LIARTAKDIDVLIDSLPSEESTAALQAASLYKLEEENHEAATCLEDVVYRGDMLLEKIQS
               70        80        90       100       110       120

              130       140    
pF1KB7 ALADIAQSQLKTRSGTHSQSLPDS
       ::::::::::::::::::::::::
CCDS87 ALADIAQSQLKTRSGTHSQSLPDS
              130       140    




144 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 08:24:20 2016 done: Fri Nov  4 08:24:20 2016
 Total Scan time:  1.840 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]