FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7522, 249 aa
  1>>>pF1KB7522 249 - 249 aa - 249 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0471+/-0.000926; mu= 10.9683+/- 0.056
 mean_var=72.0724+/-14.397, 0's: 0 Z-trim(105.8): 9  B-trim: 39 in 1/50
 Lambda= 0.151074
 statistics sampled from 8602 (8605) to 8602 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.645), E-opt: 0.2 (0.264), width:  16
 Scan time:  2.290

The best scores are:                                      opt bits E(32554)
CCDS9395.1 GTF2F2 gene_id:2963|Hs108|chr13         ( 249) 1623 362.7 1.3e-100


>>CCDS9395.1 GTF2F2 gene_id:2963|Hs108|chr13              (249 aa)
 initn: 1623 init1: 1623 opt: 1623  Z-score: 1919.9  bits: 362.7 E(32554): 1.3e-100
Smith-Waterman score: 1623; 100.0% identity (100.0% similar) in 249 aa overlap (1-249:1-249)

               10        20        30        40        50        60
pF1KB7 MAERGELDLTGAKQNTGVWLVKVPKYLSQQWAKASGRGEVGKLRIAKTQGRTEVSFTLNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 MAERGELDLTGAKQNTGVWLVKVPKYLSQQWAKASGRGEVGKLRIAKTQGRTEVSFTLNE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 DLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 DLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 SENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANHQYNIEYERKKKEDGKRARADK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 SENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANHQYNIEYERKKKEDGKRARADK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 QHVLDMLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKEIGVQNVKGIHKNTWELKPEYR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 QHVLDMLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKEIGVQNVKGIHKNTWELKPEYR
              190       200       210       220       230       240

                
pF1KB7 HYQGEEKSD
       :::::::::
CCDS93 HYQGEEKSD
                




249 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 18:06:36 2016 done: Sat Nov  5 18:06:36 2016
 Total Scan time:  2.290 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]