Result of FASTA (omim) for
pF1KB7522
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7522, 249 aa
1>>>pF1KB7522 249 - 249 aa - 249 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.6238+/-0.000383; mu= 13.6868+/- 0.024
mean_var=73.6324+/-14.747, 0's: 0 Z-trim(113.1): 11 B-trim: 0 in 0/55
Lambda= 0.149465
statistics sampled from 22227 (22236) to 22227 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.638), E-opt: 0.2 (0.261), width: 16
Scan time: 6.740
The best scores are: opt bits E(85289)
NP_004119 (OMIM: 189969) general transcription fac ( 249) 1623 359.0 4.4e-99
XP_011533354 (OMIM: 189969) PREDICTED: general tra ( 275) 975 219.3 5.6e-57
XP_016876040 (OMIM: 189969) PREDICTED: general tra ( 149) 970 218.1 7e-57
XP_011533355 (OMIM: 189969) PREDICTED: general tra ( 131) 653 149.7 2.4e-36
XP_016876039 (OMIM: 189969) PREDICTED: general tra ( 193) 653 149.8 3.3e-36
>>NP_004119 (OMIM: 189969) general transcription factor (249 aa)
initn: 1623 init1: 1623 opt: 1623 Z-score: 1899.8 bits: 359.0 E(85289): 4.4e-99
Smith-Waterman score: 1623; 100.0% identity (100.0% similar) in 249 aa overlap (1-249:1-249)
10 20 30 40 50 60
pF1KB7 MAERGELDLTGAKQNTGVWLVKVPKYLSQQWAKASGRGEVGKLRIAKTQGRTEVSFTLNE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MAERGELDLTGAKQNTGVWLVKVPKYLSQQWAKASGRGEVGKLRIAKTQGRTEVSFTLNE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 DLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 DLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 SENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANHQYNIEYERKKKEDGKRARADK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 SENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANHQYNIEYERKKKEDGKRARADK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 QHVLDMLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKEIGVQNVKGIHKNTWELKPEYR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 QHVLDMLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKEIGVQNVKGIHKNTWELKPEYR
190 200 210 220 230 240
pF1KB7 HYQGEEKSD
:::::::::
NP_004 HYQGEEKSD
>>XP_011533354 (OMIM: 189969) PREDICTED: general transcr (275 aa)
initn: 971 init1: 971 opt: 975 Z-score: 1144.0 bits: 219.3 E(85289): 5.6e-57
Smith-Waterman score: 1561; 90.5% identity (90.5% similar) in 275 aa overlap (1-249:1-275)
10 20 30 40 50 60
pF1KB7 MAERGELDLTGAKQNTGVWLVKVPKYLSQQWAKASGRGEVGKLRIAKTQGRTEVSFTLNE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAERGELDLTGAKQNTGVWLVKVPKYLSQQWAKASGRGEVGKLRIAKTQGRTEVSFTLNE
10 20 30 40 50 60
70 80 90 100
pF1KB7 DLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSS-------------------
:::::::::::::::::::::::::::::::::::::::::
XP_011 DLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSGGSRMTAGVTTVISTSQAS
70 80 90 100 110 120
110 120 130 140 150
pF1KB7 -------DKLSLEGIVVQRAECRPAASENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYK
:::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KGKQDGEDKLSLEGIVVQRAECRPAASENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYK
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB7 PVANHQYNIEYERKKKEDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVVYLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PVANHQYNIEYERKKKEDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVVYLK
190 200 210 220 230 240
220 230 240
pF1KB7 EILKEIGVQNVKGIHKNTWELKPEYRHYQGEEKSD
:::::::::::::::::::::::::::::::::::
XP_011 EILKEIGVQNVKGIHKNTWELKPEYRHYQGEEKSD
250 260 270
>>XP_016876040 (OMIM: 189969) PREDICTED: general transcr (149 aa)
initn: 970 init1: 970 opt: 970 Z-score: 1142.1 bits: 218.1 E(85289): 7e-57
Smith-Waterman score: 970; 100.0% identity (100.0% similar) in 148 aa overlap (102-249:2-149)
80 90 100 110 120 130
pF1KB7 PASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAASENYMRLKRLQ
::::::::::::::::::::::::::::::
XP_016 MDKLSLEGIVVQRAECRPAASENYMRLKRLQ
10 20 30
140 150 160 170 180 190
pF1KB7 IEESSKPVRLSQQLDKVVTTNYKPVANHQYNIEYERKKKEDGKRARADKQHVLDMLFSAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IEESSKPVRLSQQLDKVVTTNYKPVANHQYNIEYERKKKEDGKRARADKQHVLDMLFSAF
40 50 60 70 80 90
200 210 220 230 240
pF1KB7 EKHQYYNLKDLVDITKQPVVYLKEILKEIGVQNVKGIHKNTWELKPEYRHYQGEEKSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EKHQYYNLKDLVDITKQPVVYLKEILKEIGVQNVKGIHKNTWELKPEYRHYQGEEKSD
100 110 120 130 140
>>XP_011533355 (OMIM: 189969) PREDICTED: general transcr (131 aa)
initn: 653 init1: 653 opt: 653 Z-score: 773.6 bits: 149.7 E(85289): 2.4e-36
Smith-Waterman score: 653; 100.0% identity (100.0% similar) in 101 aa overlap (1-101:1-101)
10 20 30 40 50 60
pF1KB7 MAERGELDLTGAKQNTGVWLVKVPKYLSQQWAKASGRGEVGKLRIAKTQGRTEVSFTLNE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAERGELDLTGAKQNTGVWLVKVPKYLSQQWAKASGRGEVGKLRIAKTQGRTEVSFTLNE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 DLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAA
:::::::::::::::::::::::::::::::::::::::::
XP_011 DLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSGGSRMTAGVTTVISTSQAS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 SENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANHQYNIEYERKKKEDGKRARADK
XP_011 KGKQDGEGQSA
130
>>XP_016876039 (OMIM: 189969) PREDICTED: general transcr (193 aa)
initn: 653 init1: 653 opt: 653 Z-score: 771.0 bits: 149.8 E(85289): 3.3e-36
Smith-Waterman score: 653; 100.0% identity (100.0% similar) in 101 aa overlap (1-101:1-101)
10 20 30 40 50 60
pF1KB7 MAERGELDLTGAKQNTGVWLVKVPKYLSQQWAKASGRGEVGKLRIAKTQGRTEVSFTLNE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAERGELDLTGAKQNTGVWLVKVPKYLSQQWAKASGRGEVGKLRIAKTQGRTEVSFTLNE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 DLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAA
:::::::::::::::::::::::::::::::::::::::::
XP_016 DLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSGGSRMTAGVTTVISTSQAS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 SENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANHQYNIEYERKKKEDGKRARADK
XP_016 KGKQDGEESFLVTQARVQWHDLGSQQPLPPGLKQLSCLSLLSNWDYKCALPTLANYCIFF
130 140 150 160 170 180
249 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 18:06:36 2016 done: Sat Nov 5 18:06:37 2016
Total Scan time: 6.740 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]