Result of FASTA (omim) for
pF1KB7525
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7525, 150 aa
1>>>pF1KB7525 150 - 150 aa - 150 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.9362+/-0.000345; mu= 13.0796+/- 0.021
mean_var=53.2656+/-10.715, 0's: 0 Z-trim(112.4): 12 B-trim: 0 in 0/54
Lambda= 0.175732
statistics sampled from 21319 (21331) to 21319 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.64), E-opt: 0.2 (0.25), width: 16
Scan time: 4.450
The best scores are: opt bits E(85289)
XP_006713731 (OMIM: 606023) PREDICTED: DNA-directe ( 150) 987 257.9 4.3e-69
NP_006223 (OMIM: 606023) DNA-directed RNA polymera ( 150) 987 257.9 4.3e-69
NP_001265629 (OMIM: 606023) DNA-directed RNA polym ( 114) 742 195.8 1.7e-50
NP_001265628 (OMIM: 606023) DNA-directed RNA polym ( 114) 742 195.8 1.7e-50
XP_006713733 (OMIM: 606023) PREDICTED: DNA-directe ( 114) 742 195.8 1.7e-50
NP_001265627 (OMIM: 606023) DNA-directed RNA polym ( 175) 742 195.9 2.5e-50
XP_006713730 (OMIM: 606023) PREDICTED: DNA-directe ( 175) 742 195.9 2.5e-50
XP_006713729 (OMIM: 606023) PREDICTED: DNA-directe ( 175) 742 195.9 2.5e-50
NP_001265643 (OMIM: 606023) DNA-directed RNA polym ( 122) 582 155.2 2.9e-38
XP_016862125 (OMIM: 606023) PREDICTED: DNA-directe ( 122) 582 155.2 2.9e-38
XP_016862126 (OMIM: 606023) PREDICTED: DNA-directe ( 86) 337 93.0 1.1e-19
NP_001265644 (OMIM: 606023) DNA-directed RNA polym ( 86) 337 93.0 1.1e-19
>>XP_006713731 (OMIM: 606023) PREDICTED: DNA-directed RN (150 aa)
initn: 987 init1: 987 opt: 987 Z-score: 1361.4 bits: 257.9 E(85289): 4.3e-69
Smith-Waterman score: 987; 100.0% identity (100.0% similar) in 150 aa overlap (1-150:1-150)
10 20 30 40 50 60
pF1KB7 MAGILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MAGILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 ASTLYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAYVSYGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 ASTLYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAYVSYGG
70 80 90 100 110 120
130 140 150
pF1KB7 LLMRLQGDANNLHGFEVDSRVYLLMKKLAF
::::::::::::::::::::::::::::::
XP_006 LLMRLQGDANNLHGFEVDSRVYLLMKKLAF
130 140 150
>>NP_006223 (OMIM: 606023) DNA-directed RNA polymerases (150 aa)
initn: 987 init1: 987 opt: 987 Z-score: 1361.4 bits: 257.9 E(85289): 4.3e-69
Smith-Waterman score: 987; 100.0% identity (100.0% similar) in 150 aa overlap (1-150:1-150)
10 20 30 40 50 60
pF1KB7 MAGILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MAGILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 ASTLYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAYVSYGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 ASTLYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAYVSYGG
70 80 90 100 110 120
130 140 150
pF1KB7 LLMRLQGDANNLHGFEVDSRVYLLMKKLAF
::::::::::::::::::::::::::::::
NP_006 LLMRLQGDANNLHGFEVDSRVYLLMKKLAF
130 140 150
>>NP_001265629 (OMIM: 606023) DNA-directed RNA polymeras (114 aa)
initn: 742 init1: 742 opt: 742 Z-score: 1027.5 bits: 195.8 E(85289): 1.7e-50
Smith-Waterman score: 742; 100.0% identity (100.0% similar) in 114 aa overlap (37-150:1-114)
10 20 30 40 50 60
pF1KB7 EDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIASTLYE
::::::::::::::::::::::::::::::
NP_001 MDLILDVNIQIYPVDLGDKFRLVIASTLYE
10 20 30
70 80 90 100 110 120
pF1KB7 DGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAYVSYGGLLMRLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAYVSYGGLLMRLQ
40 50 60 70 80 90
130 140 150
pF1KB7 GDANNLHGFEVDSRVYLLMKKLAF
::::::::::::::::::::::::
NP_001 GDANNLHGFEVDSRVYLLMKKLAF
100 110
>>NP_001265628 (OMIM: 606023) DNA-directed RNA polymeras (114 aa)
initn: 742 init1: 742 opt: 742 Z-score: 1027.5 bits: 195.8 E(85289): 1.7e-50
Smith-Waterman score: 742; 100.0% identity (100.0% similar) in 114 aa overlap (37-150:1-114)
10 20 30 40 50 60
pF1KB7 EDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIASTLYE
::::::::::::::::::::::::::::::
NP_001 MDLILDVNIQIYPVDLGDKFRLVIASTLYE
10 20 30
70 80 90 100 110 120
pF1KB7 DGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAYVSYGGLLMRLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAYVSYGGLLMRLQ
40 50 60 70 80 90
130 140 150
pF1KB7 GDANNLHGFEVDSRVYLLMKKLAF
::::::::::::::::::::::::
NP_001 GDANNLHGFEVDSRVYLLMKKLAF
100 110
>>XP_006713733 (OMIM: 606023) PREDICTED: DNA-directed RN (114 aa)
initn: 742 init1: 742 opt: 742 Z-score: 1027.5 bits: 195.8 E(85289): 1.7e-50
Smith-Waterman score: 742; 100.0% identity (100.0% similar) in 114 aa overlap (37-150:1-114)
10 20 30 40 50 60
pF1KB7 EDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIASTLYE
::::::::::::::::::::::::::::::
XP_006 MDLILDVNIQIYPVDLGDKFRLVIASTLYE
10 20 30
70 80 90 100 110 120
pF1KB7 DGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAYVSYGGLLMRLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 DGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAYVSYGGLLMRLQ
40 50 60 70 80 90
130 140 150
pF1KB7 GDANNLHGFEVDSRVYLLMKKLAF
::::::::::::::::::::::::
XP_006 GDANNLHGFEVDSRVYLLMKKLAF
100 110
>>NP_001265627 (OMIM: 606023) DNA-directed RNA polymeras (175 aa)
initn: 755 init1: 742 opt: 742 Z-score: 1024.6 bits: 195.9 E(85289): 2.5e-50
Smith-Waterman score: 742; 100.0% identity (100.0% similar) in 112 aa overlap (1-112:1-112)
10 20 30 40 50 60
pF1KB7 MAGILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAGILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 ASTLYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAYVSYGG
::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ASTLYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLLRLRAAEW
70 80 90 100 110 120
130 140 150
pF1KB7 LLMRLQGDANNLHGFEVDSRVYLLMKKLAF
NP_001 QCSRITGWGLLFQLCVRVLWGPAHEAAGGCQQPAWIRGGLQSLSPDEEASLLNLA
130 140 150 160 170
>>XP_006713730 (OMIM: 606023) PREDICTED: DNA-directed RN (175 aa)
initn: 755 init1: 742 opt: 742 Z-score: 1024.6 bits: 195.9 E(85289): 2.5e-50
Smith-Waterman score: 742; 100.0% identity (100.0% similar) in 112 aa overlap (1-112:1-112)
10 20 30 40 50 60
pF1KB7 MAGILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MAGILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 ASTLYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAYVSYGG
::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 ASTLYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLLRLRAAEW
70 80 90 100 110 120
130 140 150
pF1KB7 LLMRLQGDANNLHGFEVDSRVYLLMKKLAF
XP_006 QCSRITGWGLLFQLCVRVLWGPAHEAAGGCQQPAWIRGGLQSLSPDEEASLLNLA
130 140 150 160 170
>>XP_006713729 (OMIM: 606023) PREDICTED: DNA-directed RN (175 aa)
initn: 755 init1: 742 opt: 742 Z-score: 1024.6 bits: 195.9 E(85289): 2.5e-50
Smith-Waterman score: 742; 100.0% identity (100.0% similar) in 112 aa overlap (1-112:1-112)
10 20 30 40 50 60
pF1KB7 MAGILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MAGILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 ASTLYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAYVSYGG
::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 ASTLYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLLRLRAAEW
70 80 90 100 110 120
130 140 150
pF1KB7 LLMRLQGDANNLHGFEVDSRVYLLMKKLAF
XP_006 QCSRITGWGLLFQLCVRVLWGPAHEAAGGCQQPAWIRGGLQSLSPDEEASLLNLA
130 140 150 160 170
>>NP_001265643 (OMIM: 606023) DNA-directed RNA polymeras (122 aa)
initn: 789 init1: 558 opt: 582 Z-score: 807.8 bits: 155.2 E(85289): 2.9e-38
Smith-Waterman score: 736; 80.7% identity (80.7% similar) in 150 aa overlap (1-150:1-122)
10 20 30 40 50 60
pF1KB7 MAGILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAGILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 ASTLYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAYVSYGG
::::::::::::::::::::::: ::::::::
NP_001 ASTLYEDGTLDDGEYNPTDDRPSS----------------------------SAYVSYGG
70 80 90
130 140 150
pF1KB7 LLMRLQGDANNLHGFEVDSRVYLLMKKLAF
::::::::::::::::::::::::::::::
NP_001 LLMRLQGDANNLHGFEVDSRVYLLMKKLAF
100 110 120
>>XP_016862125 (OMIM: 606023) PREDICTED: DNA-directed RN (122 aa)
initn: 789 init1: 558 opt: 582 Z-score: 807.8 bits: 155.2 E(85289): 2.9e-38
Smith-Waterman score: 736; 80.7% identity (80.7% similar) in 150 aa overlap (1-150:1-122)
10 20 30 40 50 60
pF1KB7 MAGILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAGILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 ASTLYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAYVSYGG
::::::::::::::::::::::: ::::::::
XP_016 ASTLYEDGTLDDGEYNPTDDRPSS----------------------------SAYVSYGG
70 80 90
130 140 150
pF1KB7 LLMRLQGDANNLHGFEVDSRVYLLMKKLAF
::::::::::::::::::::::::::::::
XP_016 LLMRLQGDANNLHGFEVDSRVYLLMKKLAF
100 110 120
150 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 08:26:29 2016 done: Fri Nov 4 08:26:30 2016
Total Scan time: 4.450 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]