FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7527, 155 aa
  1>>>pF1KB7527 155 - 155 aa - 155 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1742+/-0.000696; mu= 9.1233+/- 0.042
 mean_var=96.4209+/-18.953, 0's: 0 Z-trim(112.3): 8  B-trim: 42 in 1/50
 Lambda= 0.130614
 statistics sampled from 13083 (13090) to 13083 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.776), E-opt: 0.2 (0.402), width:  16
 Scan time:  1.910

The best scores are:                                      opt bits E(32554)
CCDS11312.1 ZNHIT3 gene_id:9326|Hs108|chr17        ( 155) 1057 208.3 1.6e-54
CCDS62156.1 ZNHIT3 gene_id:9326|Hs108|chr17        ( 148)  659 133.3 5.7e-32


>>CCDS11312.1 ZNHIT3 gene_id:9326|Hs108|chr17             (155 aa)
 initn: 1057 init1: 1057 opt: 1057  Z-score: 1092.5  bits: 208.3 E(32554): 1.6e-54
Smith-Waterman score: 1057; 100.0% identity (100.0% similar) in 155 aa overlap (1-155:1-155)

               10        20        30        40        50        60
pF1KB7 MASLKCSTVVCVICLEKPKYRCPACRVPYCSVVCFRKHKEQCNPETRPVEKKIRSALPTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MASLKCSTVVCVICLEKPKYRCPACRVPYCSVVCFRKHKEQCNPETRPVEKKIRSALPTK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 TVKPVENKDDDDSIADFLNSDEEEDRVSLQNLKNLGESATLRSLLLNPHLRQLMVNLDQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 TVKPVENKDDDDSIADFLNSDEEEDRVSLQNLKNLGESATLRSLLLNPHLRQLMVNLDQG
               70        80        90       100       110       120

              130       140       150     
pF1KB7 EDKAKLMRAYMQEPLFVEFADCCLGIVEPSQNEES
       :::::::::::::::::::::::::::::::::::
CCDS11 EDKAKLMRAYMQEPLFVEFADCCLGIVEPSQNEES
              130       140       150     

>>CCDS62156.1 ZNHIT3 gene_id:9326|Hs108|chr17             (148 aa)
 initn: 659 init1: 659 opt: 659  Z-score: 687.5  bits: 133.3 E(32554): 5.7e-32
Smith-Waterman score: 659; 100.0% identity (100.0% similar) in 95 aa overlap (1-95:1-95)

               10        20        30        40        50        60
pF1KB7 MASLKCSTVVCVICLEKPKYRCPACRVPYCSVVCFRKHKEQCNPETRPVEKKIRSALPTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 MASLKCSTVVCVICLEKPKYRCPACRVPYCSVVCFRKHKEQCNPETRPVEKKIRSALPTK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 TVKPVENKDDDDSIADFLNSDEEEDRVSLQNLKNLGESATLRSLLLNPHLRQLMVNLDQG
       :::::::::::::::::::::::::::::::::::                         
CCDS62 TVKPVENKDDDDSIADFLNSDEEEDRVSLQNLKNLDGLSSCHPGWSAAAQSRLTATSPSQ
               70        80        90       100       110       120

              130       140       150     
pF1KB7 EDKAKLMRAYMQEPLFVEFADCCLGIVEPSQNEES
                                          
CCDS62 IQAILMPQPPEQLGLQAPATTPNQFLYF       
              130       140               




155 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 08:27:42 2016 done: Fri Nov  4 08:27:42 2016
 Total Scan time:  1.910 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]