FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7527, 155 aa
  1>>>pF1KB7527 155 - 155 aa - 155 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1422+/-0.000291; mu= 9.2156+/- 0.018
 mean_var=96.3741+/-18.808, 0's: 0 Z-trim(119.5): 6  B-trim: 30 in 1/51
 Lambda= 0.130645
 statistics sampled from 33562 (33568) to 33562 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.775), E-opt: 0.2 (0.394), width:  16
 Scan time:  5.560

The best scores are:                                      opt bits E(85289)
NP_004764 (OMIM: 604500) zinc finger HIT domain-co ( 155) 1057 208.4 3.8e-54
NP_001268361 (OMIM: 604500) zinc finger HIT domain ( 148)  659 133.4 1.4e-31
NP_001268362 (OMIM: 604500) zinc finger HIT domain (  80)  486 100.6 5.6e-22
NP_001268363 (OMIM: 604500) zinc finger HIT domain (  99)  402 84.8 3.9e-17


>>NP_004764 (OMIM: 604500) zinc finger HIT domain-contai  (155 aa)
 initn: 1057 init1: 1057 opt: 1057  Z-score: 1093.0  bits: 208.4 E(85289): 3.8e-54
Smith-Waterman score: 1057; 100.0% identity (100.0% similar) in 155 aa overlap (1-155:1-155)

               10        20        30        40        50        60
pF1KB7 MASLKCSTVVCVICLEKPKYRCPACRVPYCSVVCFRKHKEQCNPETRPVEKKIRSALPTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MASLKCSTVVCVICLEKPKYRCPACRVPYCSVVCFRKHKEQCNPETRPVEKKIRSALPTK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 TVKPVENKDDDDSIADFLNSDEEEDRVSLQNLKNLGESATLRSLLLNPHLRQLMVNLDQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 TVKPVENKDDDDSIADFLNSDEEEDRVSLQNLKNLGESATLRSLLLNPHLRQLMVNLDQG
               70        80        90       100       110       120

              130       140       150     
pF1KB7 EDKAKLMRAYMQEPLFVEFADCCLGIVEPSQNEES
       :::::::::::::::::::::::::::::::::::
NP_004 EDKAKLMRAYMQEPLFVEFADCCLGIVEPSQNEES
              130       140       150     

>>NP_001268361 (OMIM: 604500) zinc finger HIT domain-con  (148 aa)
 initn: 659 init1: 659 opt: 659  Z-score: 687.9  bits: 133.4 E(85289): 1.4e-31
Smith-Waterman score: 659; 100.0% identity (100.0% similar) in 95 aa overlap (1-95:1-95)

               10        20        30        40        50        60
pF1KB7 MASLKCSTVVCVICLEKPKYRCPACRVPYCSVVCFRKHKEQCNPETRPVEKKIRSALPTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MASLKCSTVVCVICLEKPKYRCPACRVPYCSVVCFRKHKEQCNPETRPVEKKIRSALPTK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 TVKPVENKDDDDSIADFLNSDEEEDRVSLQNLKNLGESATLRSLLLNPHLRQLMVNLDQG
       :::::::::::::::::::::::::::::::::::                         
NP_001 TVKPVENKDDDDSIADFLNSDEEEDRVSLQNLKNLDGLSSCHPGWSAAAQSRLTATSPSQ
               70        80        90       100       110       120

              130       140       150     
pF1KB7 EDKAKLMRAYMQEPLFVEFADCCLGIVEPSQNEES
                                          
NP_001 IQAILMPQPPEQLGLQAPATTPNQFLYF       
              130       140               

>>NP_001268362 (OMIM: 604500) zinc finger HIT domain-con  (80 aa)
 initn: 486 init1: 486 opt: 486  Z-score: 515.5  bits: 100.6 E(85289): 5.6e-22
Smith-Waterman score: 486; 100.0% identity (100.0% similar) in 68 aa overlap (1-68:1-68)

               10        20        30        40        50        60
pF1KB7 MASLKCSTVVCVICLEKPKYRCPACRVPYCSVVCFRKHKEQCNPETRPVEKKIRSALPTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MASLKCSTVVCVICLEKPKYRCPACRVPYCSVVCFRKHKEQCNPETRPVEKKIRSALPTK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 TVKPVENKDDDDSIADFLNSDEEEDRVSLQNLKNLGESATLRSLLLNPHLRQLMVNLDQG
       ::::::::                                                    
NP_001 TVKPVENKVMRKKTEFLCRI                                        
               70        80                                        

>>NP_001268363 (OMIM: 604500) zinc finger HIT domain-con  (99 aa)
 initn: 402 init1: 402 opt: 402  Z-score: 428.6  bits: 84.8 E(85289): 3.9e-17
Smith-Waterman score: 570; 63.9% identity (63.9% similar) in 155 aa overlap (1-155:1-99)

               10        20        30        40        50        60
pF1KB7 MASLKCSTVVCVICLEKPKYRCPACRVPYCSVVCFRKHKEQCNPETRPVEKKIRSALPTK
       :::::::::::::::::::::::::::::::::::::::                     
NP_001 MASLKCSTVVCVICLEKPKYRCPACRVPYCSVVCFRKHK---------------------
               10        20        30                              

               70        80        90       100       110       120
pF1KB7 TVKPVENKDDDDSIADFLNSDEEEDRVSLQNLKNLGESATLRSLLLNPHLRQLMVNLDQG
                                          :::::::::::::::::::::::::
NP_001 -----------------------------------GESATLRSLLLNPHLRQLMVNLDQG
                                         40        50        60    

              130       140       150     
pF1KB7 EDKAKLMRAYMQEPLFVEFADCCLGIVEPSQNEES
       :::::::::::::::::::::::::::::::::::
NP_001 EDKAKLMRAYMQEPLFVEFADCCLGIVEPSQNEES
           70        80        90         




155 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 08:27:43 2016 done: Fri Nov  4 08:27:43 2016
 Total Scan time:  5.560 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]