FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7529, 163 aa
  1>>>pF1KB7529 163 - 163 aa - 163 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.2961+/-0.000695; mu= 4.8282+/- 0.042
 mean_var=152.7942+/-30.306, 0's: 0 Z-trim(115.1): 38  B-trim: 0 in 0/55
 Lambda= 0.103758
 statistics sampled from 15603 (15637) to 15603 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.815), E-opt: 0.2 (0.48), width:  16
 Scan time:  2.200

The best scores are:                                      opt bits E(32554)
CCDS9842.1 JDP2 gene_id:122953|Hs108|chr14         ( 163) 1048 167.2 4.1e-42
CCDS45139.1 JDP2 gene_id:122953|Hs108|chr14        ( 174) 1048 167.2 4.3e-42
CCDS1506.1 ATF3 gene_id:467|Hs108|chr1             ( 181)  430 74.7 3.1e-14
CCDS58059.1 ATF3 gene_id:467|Hs108|chr1            ( 124)  426 74.0 3.5e-14


>>CCDS9842.1 JDP2 gene_id:122953|Hs108|chr14              (163 aa)
 initn: 1048 init1: 1048 opt: 1048  Z-score: 869.6  bits: 167.2 E(32554): 4.1e-42
Smith-Waterman score: 1048; 99.4% identity (100.0% similar) in 163 aa overlap (1-163:1-163)

               10        20        30        40        50        60
pF1KB7 MMPGQIPDPSVTAGSLPGLGPLTGLPSSALTVEELKYADIRNLGAMIAPLHFLEVKLGKR
       ::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 MMPGQIPDPSVTTGSLPGLGPLTGLPSSALTVEELKYADIRNLGAMIAPLHFLEVKLGKR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 PQPVKSELDEEEERRKRRREKNKVAAARCRNKKKERTEFLQRESERLELMNAELKTQIEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 PQPVKSELDEEEERRKRRREKNKVAAARCRNKKKERTEFLQRESERLELMNAELKTQIEE
               70        80        90       100       110       120

              130       140       150       160   
pF1KB7 LKQERQQLILMLNRHRPTCIVRTDSVKTPESEGNPLLEQLEKK
       :::::::::::::::::::::::::::::::::::::::::::
CCDS98 LKQERQQLILMLNRHRPTCIVRTDSVKTPESEGNPLLEQLEKK
              130       140       150       160   

>>CCDS45139.1 JDP2 gene_id:122953|Hs108|chr14             (174 aa)
 initn: 1048 init1: 1048 opt: 1048  Z-score: 869.2  bits: 167.2 E(32554): 4.3e-42
Smith-Waterman score: 1048; 99.4% identity (100.0% similar) in 163 aa overlap (1-163:12-174)

                          10        20        30        40         
pF1KB7            MMPGQIPDPSVTAGSLPGLGPLTGLPSSALTVEELKYADIRNLGAMIAP
                  ::::::::::::.::::::::::::::::::::::::::::::::::::
CCDS45 MVAGWPATPPAMMPGQIPDPSVTTGSLPGLGPLTGLPSSALTVEELKYADIRNLGAMIAP
               10        20        30        40        50        60

      50        60        70        80        90       100         
pF1KB7 LHFLEVKLGKRPQPVKSELDEEEERRKRRREKNKVAAARCRNKKKERTEFLQRESERLEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LHFLEVKLGKRPQPVKSELDEEEERRKRRREKNKVAAARCRNKKKERTEFLQRESERLEL
               70        80        90       100       110       120

     110       120       130       140       150       160   
pF1KB7 MNAELKTQIEELKQERQQLILMLNRHRPTCIVRTDSVKTPESEGNPLLEQLEKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MNAELKTQIEELKQERQQLILMLNRHRPTCIVRTDSVKTPESEGNPLLEQLEKK
              130       140       150       160       170    

>>CCDS1506.1 ATF3 gene_id:467|Hs108|chr1                  (181 aa)
 initn: 550 init1: 419 opt: 430  Z-score: 369.0  bits: 74.7 E(32554): 3.1e-14
Smith-Waterman score: 450; 49.4% identity (73.3% similar) in 172 aa overlap (3-162:6-176)

                  10         20              30        40        50
pF1KB7    MMPGQIPDPSVTAGSL-PGLGPLTGL------PSSALTVEELKYADIRNLGAMIAPL
            :::.    :.:... : :.:  .:        . .. :::..: :.:        
CCDS15 MMLQHPGQVSASEVSASAIVPCLSPPGSLVFEDFANLTPFVKEELRFA-IQNKHLCHRMS
               10        20        30        40         50         

                60            70        80        90       100     
pF1KB7 HFLE-VKLGKRPQPV---KSEL-DEEEERRKRRREKNKVAAARCRNKKKERTEFLQRESE
         :: : .. ::  :   :.:.  ::.::.:::::.::.:::.:::::::.:: ::.:::
CCDS15 SALESVTVSDRPLGVSITKAEVAPEEDERKKRRRERNKIAAAKCRNKKKEKTECLQKESE
      60        70        80        90       100       110         

         110       120       130       140       150       160     
pF1KB7 RLELMNAELKTQIEELKQERQQLILMLNRHRPTCIVRTDSVKTPESEGNPLLEQLEKK  
       .:: .:::::.::::::.:.:.:: ::: ::::::::... .:::.: : ...:...   
CCDS15 KLESVNAELKAQIEELKNEKQHLIYMLNLHRPTCIVRAQNGRTPEDERNLFIQQIKEGTL
     120       130       140       150       160       170         

CCDS15 QS
     180 

>>CCDS58059.1 ATF3 gene_id:467|Hs108|chr1                 (124 aa)
 initn: 520 init1: 419 opt: 426  Z-score: 368.0  bits: 74.0 E(32554): 3.5e-14
Smith-Waterman score: 426; 60.7% identity (85.7% similar) in 112 aa overlap (55-162:8-119)

           30        40        50        60            70        80
pF1KB7 LPSSALTVEELKYADIRNLGAMIAPLHFLEVKLGKRPQPV---KSEL-DEEEERRKRRRE
                                     : .. ::  :   :.:.  ::.::.:::::
CCDS58                        MSSALESVTVSDRPLGVSITKAEVAPEEDERKKRRRE
                                      10        20        30       

               90       100       110       120       130       140
pF1KB7 KNKVAAARCRNKKKERTEFLQRESERLELMNAELKTQIEELKQERQQLILMLNRHRPTCI
       .::.:::.:::::::.:: ::.:::.:: .:::::.::::::.:.:.:: ::: ::::::
CCDS58 RNKIAAAKCRNKKKEKTECLQKESEKLESVNAELKAQIEELKNEKQHLIYMLNLHRPTCI
        40        50        60        70        80        90       

              150       160       
pF1KB7 VRTDSVKTPESEGNPLLEQLEKK    
       ::... .:::.: : ...:...     
CCDS58 VRAQNGRTPEDERNLFIQQIKEGTLQS
       100       110       120    




163 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 08:28:58 2016 done: Fri Nov  4 08:28:58 2016
 Total Scan time:  2.200 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]