FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7532, 256 aa
  1>>>pF1KB7532 256 - 256 aa - 256 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.3611+/-0.000822; mu= -2.5744+/- 0.049
 mean_var=243.2574+/-49.145, 0's: 0 Z-trim(115.9): 8  B-trim: 0 in 0/53
 Lambda= 0.082232
 statistics sampled from 16435 (16436) to 16435 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.808), E-opt: 0.2 (0.505), width:  16
 Scan time:  2.540

The best scores are:                                      opt bits E(32554)
CCDS31675.1 POU2AF1 gene_id:5450|Hs108|chr11       ( 256) 1755 220.2 1.1e-57


>>CCDS31675.1 POU2AF1 gene_id:5450|Hs108|chr11            (256 aa)
 initn: 1755 init1: 1755 opt: 1755  Z-score: 1148.9  bits: 220.2 E(32554): 1.1e-57
Smith-Waterman score: 1755; 100.0% identity (100.0% similar) in 256 aa overlap (1-256:1-256)

               10        20        30        40        50        60
pF1KB7 MLWQKPTAPEQAPAPARPYQGVRVKEPVKELLRRKRGHASSGAAPAPTAVVLPHQPLATY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MLWQKPTAPEQAPAPARPYQGVRVKEPVKELLRRKRGHASSGAAPAPTAVVLPHQPLATY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 TTVGPSCLDMEGSVSAVTEEAALCAGWLSQPTPATLQPLAPWTPYTEYVPHEAVSCPYSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 TTVGPSCLDMEGSVSAVTEEAALCAGWLSQPTPATLQPLAPWTPYTEYVPHEAVSCPYSA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 DMYVQPVCPSYTVVGPSSVLTYASPPLITNVTTRSSATPAVGPPLEGPEHQAPLTYFPWP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 DMYVQPVCPSYTVVGPSSVLTYASPPLITNVTTRSSATPAVGPPLEGPEHQAPLTYFPWP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 QPLSTLPTSTLQYQPPAPALPGPQFVQLPISIPEPVLQDMEDPRRAASSLTIDKLLLEEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 QPLSTLPTSTLQYQPPAPALPGPQFVQLPISIPEPVLQDMEDPRRAASSLTIDKLLLEEE
              190       200       210       220       230       240

              250      
pF1KB7 DSDAYALNHTLSVEGF
       ::::::::::::::::
CCDS31 DSDAYALNHTLSVEGF
              250      




256 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 08:29:28 2016 done: Fri Nov  4 08:29:28 2016
 Total Scan time:  2.540 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]