FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7533, 171 aa
  1>>>pF1KB7533 171 - 171 aa - 171 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5672+/-0.000595; mu= 11.5890+/- 0.036
 mean_var=70.8643+/-14.194, 0's: 0 Z-trim(112.2): 21  B-trim: 0 in 0/53
 Lambda= 0.152356
 statistics sampled from 13023 (13041) to 13023 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.773), E-opt: 0.2 (0.401), width:  16
 Scan time:  2.070

The best scores are:                                      opt bits E(32554)
CCDS45557.1 PRDM7 gene_id:11105|Hs108|chr16        ( 492)  811 186.6 1.8e-47
CCDS43307.1 PRDM9 gene_id:56979|Hs108|chr5         ( 894)  798 183.9 2.2e-46
CCDS58130.1 PRDM11 gene_id:56981|Hs108|chr11       ( 477)  331 81.1   1e-15
CCDS73277.1 PRDM11 gene_id:56981|Hs108|chr11       (1177)  331 81.3 2.2e-15


>>CCDS45557.1 PRDM7 gene_id:11105|Hs108|chr16             (492 aa)
 initn: 814 init1: 794 opt: 811  Z-score: 965.8  bits: 186.6 E(32554): 1.8e-47
Smith-Waterman score: 811; 84.8% identity (90.6% similar) in 138 aa overlap (1-136:207-344)

                                             10        20        30
pF1KB7                               MCQNFFIDSCAAHGPPTFVKDSAVDKGHPN
                                     ::::::::::::::::::::::::::::::
CCDS45 EGKMYSLRERKGHAYKEISEPQDDDYLYCEMCQNFFIDSCAAHGPPTFVKDSAVDKGHPN
        180       190       200       210       220       230      

               40        50        60        70        80        90
pF1KB7 RSALSLPPGLRIGPSGIPQAGLGVWNEASDLPLGLHFGPYEGRITEDEEAANSGYSWLIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 RSALSLPPGLRIGPSGIPQAGLGVWNEASDLPLGLHFGPYEGRITEDEEAANSGYSWLIT
        240       250       260       270       280       290      

              100       110         120       130       140        
pF1KB7 KGRNCYEYVDGKDKSSANWMR--TKARDPSMSLMLSGLFKSKISQSTCGTQSLLSELPRT
       :::::::::::::::::::::  . :::   . ...  .. .:   ::            
CCDS45 KGRNCYEYVDGKDKSSANWMRYVNCARDDEEQNLVAFQYHRQIFYRTCRVIRPGCELLVW
        300       310       320       330       340       350      

      150       160       170                                      
pF1KB7 ICKKTSPTRESLPRGSESGAAIF                                     
                                                                   
CCDS45 SGDEYGQELGIRSSIEPAESLGQAVNCWSGMGMSMARNWASSGAASGRKSSWQGENQSQR
        360       370       380       390       400       410      

>>CCDS43307.1 PRDM9 gene_id:56979|Hs108|chr5              (894 aa)
 initn: 781 init1: 781 opt: 798  Z-score: 946.4  bits: 183.9 E(32554): 2.2e-46
Smith-Waterman score: 798; 83.3% identity (89.9% similar) in 138 aa overlap (1-136:207-344)

                                             10        20        30
pF1KB7                               MCQNFFIDSCAAHGPPTFVKDSAVDKGHPN
                                     ::::::::::::::::::::::::::::::
CCDS43 ERKMYSLRERKGHAYKEVSEPQDDDYLYCEMCQNFFIDSCAAHGPPTFVKDSAVDKGHPN
        180       190       200       210       220       230      

               40        50        60        70        80        90
pF1KB7 RSALSLPPGLRIGPSGIPQAGLGVWNEASDLPLGLHFGPYEGRITEDEEAANSGYSWLIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::::
CCDS43 RSALSLPPGLRIGPSGIPQAGLGVWNEASDLPLGLHFGPYEGRITEDEEAANNGYSWLIT
        240       250       260       270       280       290      

              100       110         120       130       140        
pF1KB7 KGRNCYEYVDGKDKSSANWMR--TKARDPSMSLMLSGLFKSKISQSTCGTQSLLSELPRT
       ::::::::::::::: :::::  . :::   . ...  .. .:   ::            
CCDS43 KGRNCYEYVDGKDKSWANWMRYVNCARDDEEQNLVAFQYHRQIFYRTCRVIRPGCELLVW
        300       310       320       330       340       350      

      150       160       170                                      
pF1KB7 ICKKTSPTRESLPRGSESGAAIF                                     
                                                                   
CCDS43 YGDEYGQELGIKWGSKWKKELMAGREPKPEIHPCPSCCLAFSSQKFLSQHVERNHSSQNF
        360       370       380       390       400       410      

>>CCDS58130.1 PRDM11 gene_id:56981|Hs108|chr11            (477 aa)
 initn: 325 init1: 177 opt: 331  Z-score: 395.8  bits: 81.1 E(32554): 1e-15
Smith-Waterman score: 331; 41.8% identity (72.7% similar) in 110 aa overlap (2-111:79-185)

                                            10        20        30 
pF1KB7                              MCQNFFIDSCAAHGPPTFVKDSAVDKGHPNR
                                     ::..:.: :  ::::.::.:. :  : :.:
CCDS58 MEVEPKKLKGKRDLIVPKSFQQVDFWFCESCQEYFVDECPNHGPPVFVSDTPVPVGIPDR
       50        60        70        80        90       100        

              40        50        60        70        80        90 
pF1KB7 SALSLPPGLRIGPSGIPQAGLGVWNEASDLPLGLHFGPYEGRITEDEEAANSGYSWLITK
       .::..: :...  .   .. .   ::.  .: :  ::::::.:. ....:.  .::::. 
CCDS58 AALTIPQGMEVVKDTSGESDVRCVNEV--IPKGHIFGPYEGQISTQDKSAGF-FSWLIVD
      110       120       130         140       150        160     

             100       110       120       130       140       150 
pF1KB7 GRNCYEYVDGKDKSSANWMRTKARDPSMSLMLSGLFKSKISQSTCGTQSLLSELPRTICK
         : :. .::.:...:::::                                        
CCDS58 KNNRYKSIDGSDETKANWMRYVVISREEREQNLLAFQHSERIYFRACRDIRPGEWLRVWY
         170       180       190       200       210       220     

>>CCDS73277.1 PRDM11 gene_id:56981|Hs108|chr11            (1177 aa)
 initn: 325 init1: 177 opt: 331  Z-score: 389.8  bits: 81.3 E(32554): 2.2e-15
Smith-Waterman score: 331; 41.8% identity (72.7% similar) in 110 aa overlap (2-111:79-185)

                                            10        20        30 
pF1KB7                              MCQNFFIDSCAAHGPPTFVKDSAVDKGHPNR
                                     ::..:.: :  ::::.::.:. :  : :.:
CCDS73 MEVEPKKLKGKRDLIVPKSFQQVDFWFCESCQEYFVDECPNHGPPVFVSDTPVPVGIPDR
       50        60        70        80        90       100        

              40        50        60        70        80        90 
pF1KB7 SALSLPPGLRIGPSGIPQAGLGVWNEASDLPLGLHFGPYEGRITEDEEAANSGYSWLITK
       .::..: :...  .   .. .   ::.  .: :  ::::::.:. ....:.  .::::. 
CCDS73 AALTIPQGMEVVKDTSGESDVRCVNEV--IPKGHIFGPYEGQISTQDKSAGF-FSWLIVD
      110       120       130         140       150        160     

             100       110       120       130       140       150 
pF1KB7 GRNCYEYVDGKDKSSANWMRTKARDPSMSLMLSGLFKSKISQSTCGTQSLLSELPRTICK
         : :. .::.:...:::::                                        
CCDS73 KNNRYKSIDGSDETKANWMRYVVISREEREQNLLAFQHSERIYFRACRDIRPGEWLRVWY
         170       180       190       200       210       220     




171 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 18:07:12 2016 done: Sat Nov  5 18:07:12 2016
 Total Scan time:  2.070 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]