Result of FASTA (omim) for
pF1KB7533
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7533, 171 aa
1>>>pF1KB7533 171 - 171 aa - 171 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2965+/-0.000269; mu= 13.2085+/- 0.017
mean_var=71.8379+/-14.707, 0's: 0 Z-trim(119.2): 55 B-trim: 1904 in 1/60
Lambda= 0.151320
statistics sampled from 32981 (33043) to 32981 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.769), E-opt: 0.2 (0.387), width: 16
Scan time: 4.830
The best scores are: opt bits E(85289)
XP_011521131 (OMIM: 609759) PREDICTED: probable hi ( 377) 1175 264.9 9.6e-71
XP_016878373 (OMIM: 609759) PREDICTED: probable hi ( 313) 811 185.4 6.9e-47
XP_016878372 (OMIM: 609759) PREDICTED: probable hi ( 419) 811 185.5 8.7e-47
XP_016878371 (OMIM: 609759) PREDICTED: probable hi ( 419) 811 185.5 8.7e-47
NP_001091643 (OMIM: 609759) probable histone-lysin ( 492) 811 185.6 9.9e-47
XP_005256331 (OMIM: 609759) PREDICTED: probable hi ( 492) 811 185.6 9.9e-47
NP_001297143 (OMIM: 609760) histone-lysine N-methy ( 894) 798 182.9 1.1e-45
NP_064612 (OMIM: 609760) histone-lysine N-methyltr ( 894) 798 182.9 1.1e-45
XP_011518532 (OMIM: 616347) PREDICTED: PR domain-c ( 516) 333 81.2 2.7e-15
NP_001243625 (OMIM: 616347) PR domain-containing p ( 477) 331 80.8 3.4e-15
XP_011518533 (OMIM: 616347) PREDICTED: PR domain-c ( 477) 331 80.8 3.4e-15
XP_011518530 (OMIM: 616347) PREDICTED: PR domain-c ( 968) 331 81.0 6e-15
XP_011518525 (OMIM: 616347) PREDICTED: PR domain-c (1177) 331 81.0 7e-15
XP_011518524 (OMIM: 616347) PREDICTED: PR domain-c (1177) 331 81.0 7e-15
XP_011518526 (OMIM: 616347) PREDICTED: PR domain-c (1177) 331 81.0 7e-15
NP_001243624 (OMIM: 616347) PR domain-containing p (1177) 331 81.0 7e-15
XP_011518527 (OMIM: 616347) PREDICTED: PR domain-c (1177) 331 81.0 7e-15
NP_036538 (OMIM: 605780) PR domain zinc finger pro ( 801) 160 43.6 0.00089
XP_005268650 (OMIM: 605780) PREDICTED: PR domain z ( 808) 149 41.2 0.0047
NP_001129082 (OMIM: 601196) PR domain zinc finger ( 226) 142 39.3 0.0049
XP_016857753 (OMIM: 601196) PREDICTED: PR domain z ( 310) 142 39.4 0.0063
XP_016866676 (OMIM: 603423) PREDICTED: PR domain z ( 789) 145 40.3 0.0085
XP_011534365 (OMIM: 603423) PREDICTED: PR domain z ( 789) 145 40.3 0.0085
XP_006715613 (OMIM: 603423) PREDICTED: PR domain z ( 796) 145 40.3 0.0086
NP_001189 (OMIM: 603423) PR domain zinc finger pro ( 825) 145 40.3 0.0088
XP_011534364 (OMIM: 603423) PREDICTED: PR domain z ( 839) 145 40.3 0.0089
>>XP_011521131 (OMIM: 609759) PREDICTED: probable histon (377 aa)
initn: 1175 init1: 1175 opt: 1175 Z-score: 1391.1 bits: 264.9 E(85289): 9.6e-71
Smith-Waterman score: 1175; 100.0% identity (100.0% similar) in 171 aa overlap (1-171:207-377)
10 20 30
pF1KB7 MCQNFFIDSCAAHGPPTFVKDSAVDKGHPN
::::::::::::::::::::::::::::::
XP_011 EGKMYSLRERKGHAYKEISEPQDDDYLYCEMCQNFFIDSCAAHGPPTFVKDSAVDKGHPN
180 190 200 210 220 230
40 50 60 70 80 90
pF1KB7 RSALSLPPGLRIGPSGIPQAGLGVWNEASDLPLGLHFGPYEGRITEDEEAANSGYSWLIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RSALSLPPGLRIGPSGIPQAGLGVWNEASDLPLGLHFGPYEGRITEDEEAANSGYSWLIT
240 250 260 270 280 290
100 110 120 130 140 150
pF1KB7 KGRNCYEYVDGKDKSSANWMRTKARDPSMSLMLSGLFKSKISQSTCGTQSLLSELPRTIC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KGRNCYEYVDGKDKSSANWMRTKARDPSMSLMLSGLFKSKISQSTCGTQSLLSELPRTIC
300 310 320 330 340 350
160 170
pF1KB7 KKTSPTRESLPRGSESGAAIF
:::::::::::::::::::::
XP_011 KKTSPTRESLPRGSESGAAIF
360 370
>>XP_016878373 (OMIM: 609759) PREDICTED: probable histon (313 aa)
initn: 814 init1: 794 opt: 811 Z-score: 962.8 bits: 185.4 E(85289): 6.9e-47
Smith-Waterman score: 811; 84.8% identity (90.6% similar) in 138 aa overlap (1-136:28-165)
10 20 30
pF1KB7 MCQNFFIDSCAAHGPPTFVKDSAVDKGHPNRSA
:::::::::::::::::::::::::::::::::
XP_016 MYSLRERKGHAYKEISEPQDDDYLYCEMCQNFFIDSCAAHGPPTFVKDSAVDKGHPNRSA
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB7 LSLPPGLRIGPSGIPQAGLGVWNEASDLPLGLHFGPYEGRITEDEEAANSGYSWLITKGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LSLPPGLRIGPSGIPQAGLGVWNEASDLPLGLHFGPYEGRITEDEEAANSGYSWLITKGR
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB7 NCYEYVDGKDKSSANWMR--TKARDPSMSLMLSGLFKSKISQSTCGTQSLLSELPRTICK
:::::::::::::::::: . ::: . ... .. .: ::
XP_016 NCYEYVDGKDKSSANWMRYVNCARDDEEQNLVAFQYHRQIFYRTCRVIRPGCELLVWSGD
130 140 150 160 170 180
160 170
pF1KB7 KTSPTRESLPRGSESGAAIF
XP_016 EYGQELGIRSSIEPAESLGQAVNCWSGMGMSMARNWASSGAASGRKSSWQGENQSQRSIH
190 200 210 220 230 240
>>XP_016878372 (OMIM: 609759) PREDICTED: probable histon (419 aa)
initn: 814 init1: 794 opt: 811 Z-score: 960.9 bits: 185.5 E(85289): 8.7e-47
Smith-Waterman score: 811; 84.8% identity (90.6% similar) in 138 aa overlap (1-136:134-271)
10 20 30
pF1KB7 MCQNFFIDSCAAHGPPTFVKDSAVDKGHPN
::::::::::::::::::::::::::::::
XP_016 EGKMYSLRERKGHAYKEISEPQDDDYLYCEMCQNFFIDSCAAHGPPTFVKDSAVDKGHPN
110 120 130 140 150 160
40 50 60 70 80 90
pF1KB7 RSALSLPPGLRIGPSGIPQAGLGVWNEASDLPLGLHFGPYEGRITEDEEAANSGYSWLIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RSALSLPPGLRIGPSGIPQAGLGVWNEASDLPLGLHFGPYEGRITEDEEAANSGYSWLIT
170 180 190 200 210 220
100 110 120 130 140
pF1KB7 KGRNCYEYVDGKDKSSANWMR--TKARDPSMSLMLSGLFKSKISQSTCGTQSLLSELPRT
::::::::::::::::::::: . ::: . ... .. .: ::
XP_016 KGRNCYEYVDGKDKSSANWMRYVNCARDDEEQNLVAFQYHRQIFYRTCRVIRPGCELLVW
230 240 250 260 270 280
150 160 170
pF1KB7 ICKKTSPTRESLPRGSESGAAIF
XP_016 SGDEYGQELGIRSSIEPAESLGQAVNCWSGMGMSMARNWASSGAASGRKSSWQGENQSQR
290 300 310 320 330 340
>>XP_016878371 (OMIM: 609759) PREDICTED: probable histon (419 aa)
initn: 814 init1: 794 opt: 811 Z-score: 960.9 bits: 185.5 E(85289): 8.7e-47
Smith-Waterman score: 811; 84.8% identity (90.6% similar) in 138 aa overlap (1-136:134-271)
10 20 30
pF1KB7 MCQNFFIDSCAAHGPPTFVKDSAVDKGHPN
::::::::::::::::::::::::::::::
XP_016 EGKMYSLRERKGHAYKEISEPQDDDYLYCEMCQNFFIDSCAAHGPPTFVKDSAVDKGHPN
110 120 130 140 150 160
40 50 60 70 80 90
pF1KB7 RSALSLPPGLRIGPSGIPQAGLGVWNEASDLPLGLHFGPYEGRITEDEEAANSGYSWLIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RSALSLPPGLRIGPSGIPQAGLGVWNEASDLPLGLHFGPYEGRITEDEEAANSGYSWLIT
170 180 190 200 210 220
100 110 120 130 140
pF1KB7 KGRNCYEYVDGKDKSSANWMR--TKARDPSMSLMLSGLFKSKISQSTCGTQSLLSELPRT
::::::::::::::::::::: . ::: . ... .. .: ::
XP_016 KGRNCYEYVDGKDKSSANWMRYVNCARDDEEQNLVAFQYHRQIFYRTCRVIRPGCELLVW
230 240 250 260 270 280
150 160 170
pF1KB7 ICKKTSPTRESLPRGSESGAAIF
XP_016 SGDEYGQELGIRSSIEPAESLGQAVNCWSGMGMSMARNWASSGAASGRKSSWQGENQSQR
290 300 310 320 330 340
>>NP_001091643 (OMIM: 609759) probable histone-lysine N- (492 aa)
initn: 814 init1: 794 opt: 811 Z-score: 959.9 bits: 185.6 E(85289): 9.9e-47
Smith-Waterman score: 811; 84.8% identity (90.6% similar) in 138 aa overlap (1-136:207-344)
10 20 30
pF1KB7 MCQNFFIDSCAAHGPPTFVKDSAVDKGHPN
::::::::::::::::::::::::::::::
NP_001 EGKMYSLRERKGHAYKEISEPQDDDYLYCEMCQNFFIDSCAAHGPPTFVKDSAVDKGHPN
180 190 200 210 220 230
40 50 60 70 80 90
pF1KB7 RSALSLPPGLRIGPSGIPQAGLGVWNEASDLPLGLHFGPYEGRITEDEEAANSGYSWLIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RSALSLPPGLRIGPSGIPQAGLGVWNEASDLPLGLHFGPYEGRITEDEEAANSGYSWLIT
240 250 260 270 280 290
100 110 120 130 140
pF1KB7 KGRNCYEYVDGKDKSSANWMR--TKARDPSMSLMLSGLFKSKISQSTCGTQSLLSELPRT
::::::::::::::::::::: . ::: . ... .. .: ::
NP_001 KGRNCYEYVDGKDKSSANWMRYVNCARDDEEQNLVAFQYHRQIFYRTCRVIRPGCELLVW
300 310 320 330 340 350
150 160 170
pF1KB7 ICKKTSPTRESLPRGSESGAAIF
NP_001 SGDEYGQELGIRSSIEPAESLGQAVNCWSGMGMSMARNWASSGAASGRKSSWQGENQSQR
360 370 380 390 400 410
>>XP_005256331 (OMIM: 609759) PREDICTED: probable histon (492 aa)
initn: 814 init1: 794 opt: 811 Z-score: 959.9 bits: 185.6 E(85289): 9.9e-47
Smith-Waterman score: 811; 84.8% identity (90.6% similar) in 138 aa overlap (1-136:207-344)
10 20 30
pF1KB7 MCQNFFIDSCAAHGPPTFVKDSAVDKGHPN
::::::::::::::::::::::::::::::
XP_005 EGKMYSLRERKGHAYKEISEPQDDDYLYCEMCQNFFIDSCAAHGPPTFVKDSAVDKGHPN
180 190 200 210 220 230
40 50 60 70 80 90
pF1KB7 RSALSLPPGLRIGPSGIPQAGLGVWNEASDLPLGLHFGPYEGRITEDEEAANSGYSWLIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RSALSLPPGLRIGPSGIPQAGLGVWNEASDLPLGLHFGPYEGRITEDEEAANSGYSWLIT
240 250 260 270 280 290
100 110 120 130 140
pF1KB7 KGRNCYEYVDGKDKSSANWMR--TKARDPSMSLMLSGLFKSKISQSTCGTQSLLSELPRT
::::::::::::::::::::: . ::: . ... .. .: ::
XP_005 KGRNCYEYVDGKDKSSANWMRYVNCARDDEEQNLVAFQYHRQIFYRTCRVIRPGCELLVW
300 310 320 330 340 350
150 160 170
pF1KB7 ICKKTSPTRESLPRGSESGAAIF
XP_005 SGDEYGQELGIRSSIEPAESLGQAVNCWSGMGMSMARNWASSGAASGRKSSWQGENQSQR
360 370 380 390 400 410
>>NP_001297143 (OMIM: 609760) histone-lysine N-methyltra (894 aa)
initn: 781 init1: 781 opt: 798 Z-score: 940.9 bits: 182.9 E(85289): 1.1e-45
Smith-Waterman score: 798; 83.3% identity (89.9% similar) in 138 aa overlap (1-136:207-344)
10 20 30
pF1KB7 MCQNFFIDSCAAHGPPTFVKDSAVDKGHPN
::::::::::::::::::::::::::::::
NP_001 ERKMYSLRERKGHAYKEVSEPQDDDYLYCEMCQNFFIDSCAAHGPPTFVKDSAVDKGHPN
180 190 200 210 220 230
40 50 60 70 80 90
pF1KB7 RSALSLPPGLRIGPSGIPQAGLGVWNEASDLPLGLHFGPYEGRITEDEEAANSGYSWLIT
::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::::
NP_001 RSALSLPPGLRIGPSGIPQAGLGVWNEASDLPLGLHFGPYEGRITEDEEAANNGYSWLIT
240 250 260 270 280 290
100 110 120 130 140
pF1KB7 KGRNCYEYVDGKDKSSANWMR--TKARDPSMSLMLSGLFKSKISQSTCGTQSLLSELPRT
::::::::::::::: ::::: . ::: . ... .. .: ::
NP_001 KGRNCYEYVDGKDKSWANWMRYVNCARDDEEQNLVAFQYHRQIFYRTCRVIRPGCELLVW
300 310 320 330 340 350
150 160 170
pF1KB7 ICKKTSPTRESLPRGSESGAAIF
NP_001 YGDEYGQELGIKWGSKWKKELMAGREPKPEIHPCPSCCLAFSSQKFLSQHVERNHSSQNF
360 370 380 390 400 410
>>NP_064612 (OMIM: 609760) histone-lysine N-methyltransf (894 aa)
initn: 781 init1: 781 opt: 798 Z-score: 940.9 bits: 182.9 E(85289): 1.1e-45
Smith-Waterman score: 798; 83.3% identity (89.9% similar) in 138 aa overlap (1-136:207-344)
10 20 30
pF1KB7 MCQNFFIDSCAAHGPPTFVKDSAVDKGHPN
::::::::::::::::::::::::::::::
NP_064 ERKMYSLRERKGHAYKEVSEPQDDDYLYCEMCQNFFIDSCAAHGPPTFVKDSAVDKGHPN
180 190 200 210 220 230
40 50 60 70 80 90
pF1KB7 RSALSLPPGLRIGPSGIPQAGLGVWNEASDLPLGLHFGPYEGRITEDEEAANSGYSWLIT
::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::::
NP_064 RSALSLPPGLRIGPSGIPQAGLGVWNEASDLPLGLHFGPYEGRITEDEEAANNGYSWLIT
240 250 260 270 280 290
100 110 120 130 140
pF1KB7 KGRNCYEYVDGKDKSSANWMR--TKARDPSMSLMLSGLFKSKISQSTCGTQSLLSELPRT
::::::::::::::: ::::: . ::: . ... .. .: ::
NP_064 KGRNCYEYVDGKDKSWANWMRYVNCARDDEEQNLVAFQYHRQIFYRTCRVIRPGCELLVW
300 310 320 330 340 350
150 160 170
pF1KB7 ICKKTSPTRESLPRGSESGAAIF
NP_064 YGDEYGQELGIKWGSKWKKELMAGREPKPEIHPCPSCCLAFSSQKFLSQHVERNHSSQNF
360 370 380 390 400 410
>>XP_011518532 (OMIM: 616347) PREDICTED: PR domain-conta (516 aa)
initn: 344 init1: 177 opt: 333 Z-score: 395.7 bits: 81.2 E(85289): 2.7e-15
Smith-Waterman score: 333; 41.6% identity (72.6% similar) in 113 aa overlap (2-114:79-188)
10 20 30
pF1KB7 MCQNFFIDSCAAHGPPTFVKDSAVDKGHPNR
::..:.: : ::::.::.:. : : :.:
XP_011 MEVEPKKLKGKRDLIVPKSFQQVDFWFCESCQEYFVDECPNHGPPVFVSDTPVPVGIPDR
50 60 70 80 90 100
40 50 60 70 80 90
pF1KB7 SALSLPPGLRIGPSGIPQAGLGVWNEASDLPLGLHFGPYEGRITEDEEAANSGYSWLITK
.::..: :... . .. . ::. .: : ::::::.:. ....:. .::::.
XP_011 AALTIPQGMEVVKDTSGESDVRCVNEV--IPKGHIFGPYEGQISTQDKSAGF-FSWLIVD
110 120 130 140 150 160
100 110 120 130 140 150
pF1KB7 GRNCYEYVDGKDKSSANWMRTKARDPSMSLMLSGLFKSKISQSTCGTQSLLSELPRTICK
: :. .::.:...:::::. :
XP_011 KNNRYKSIDGSDETKANWMRNVAHLAERKRKPKFSKEELDILVTEVTHHEAVLFGRETMR
170 180 190 200 210 220
>>NP_001243625 (OMIM: 616347) PR domain-containing prote (477 aa)
initn: 325 init1: 177 opt: 331 Z-score: 393.8 bits: 80.8 E(85289): 3.4e-15
Smith-Waterman score: 331; 41.8% identity (72.7% similar) in 110 aa overlap (2-111:79-185)
10 20 30
pF1KB7 MCQNFFIDSCAAHGPPTFVKDSAVDKGHPNR
::..:.: : ::::.::.:. : : :.:
NP_001 MEVEPKKLKGKRDLIVPKSFQQVDFWFCESCQEYFVDECPNHGPPVFVSDTPVPVGIPDR
50 60 70 80 90 100
40 50 60 70 80 90
pF1KB7 SALSLPPGLRIGPSGIPQAGLGVWNEASDLPLGLHFGPYEGRITEDEEAANSGYSWLITK
.::..: :... . .. . ::. .: : ::::::.:. ....:. .::::.
NP_001 AALTIPQGMEVVKDTSGESDVRCVNEV--IPKGHIFGPYEGQISTQDKSAGF-FSWLIVD
110 120 130 140 150 160
100 110 120 130 140 150
pF1KB7 GRNCYEYVDGKDKSSANWMRTKARDPSMSLMLSGLFKSKISQSTCGTQSLLSELPRTICK
: :. .::.:...:::::
NP_001 KNNRYKSIDGSDETKANWMRYVVISREEREQNLLAFQHSERIYFRACRDIRPGEWLRVWY
170 180 190 200 210 220
171 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 18:07:12 2016 done: Sat Nov 5 18:07:13 2016
Total Scan time: 4.830 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]