FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7535, 172 aa
  1>>>pF1KB7535 172 - 172 aa - 172 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1529+/-0.000793; mu= 13.1150+/- 0.048
 mean_var=59.4607+/-11.986, 0's: 0 Z-trim(106.1): 15  B-trim: 0 in 0/50
 Lambda= 0.166326
 statistics sampled from 8758 (8764) to 8758 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.666), E-opt: 0.2 (0.269), width:  16
 Scan time:  1.780

The best scores are:                                      opt bits E(32554)
CCDS31585.1 POLR2G gene_id:5436|Hs108|chr11        ( 172) 1149 283.8 3.6e-77


>>CCDS31585.1 POLR2G gene_id:5436|Hs108|chr11             (172 aa)
 initn: 1149 init1: 1149 opt: 1149  Z-score: 1498.9  bits: 283.8 E(32554): 3.6e-77
Smith-Waterman score: 1149; 100.0% identity (100.0% similar) in 172 aa overlap (1-172:1-172)

               10        20        30        40        50        60
pF1KB7 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD
               70        80        90       100       110       120

              130       140       150       160       170  
pF1KB7 PNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS
              130       140       150       160       170  




172 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 08:29:56 2016 done: Fri Nov  4 08:29:57 2016
 Total Scan time:  1.780 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]