FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7536, 257 aa
  1>>>pF1KB7536 257 - 257 aa - 257 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.8025+/-0.000708; mu= 10.4764+/- 0.043
 mean_var=167.3692+/-34.667, 0's: 0 Z-trim(115.6): 169  B-trim: 16 in 1/51
 Lambda= 0.099137
 statistics sampled from 15939 (16139) to 15939 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.821), E-opt: 0.2 (0.496), width:  16
 Scan time:  2.830

The best scores are:                                      opt bits E(32554)
CCDS9930.1 GSC gene_id:145258|Hs108|chr14          ( 257) 1760 262.7 1.8e-70
CCDS13757.1 GSC2 gene_id:2928|Hs108|chr22          ( 205)  373 64.2 8.1e-11


>>CCDS9930.1 GSC gene_id:145258|Hs108|chr14               (257 aa)
 initn: 1760 init1: 1760 opt: 1760  Z-score: 1378.6  bits: 262.7 E(32554): 1.8e-70
Smith-Waterman score: 1760; 100.0% identity (100.0% similar) in 257 aa overlap (1-257:1-257)

               10        20        30        40        50        60
pF1KB7 MPASMFSIDNILAARPRCKDSVLPVAHSAAAPVVFPALHGDSLYGASGGASSDYGAFYPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 MPASMFSIDNILAARPRCKDSVLPVAHSAAAPVVFPALHGDSLYGASGGASSDYGAFYPR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 PVAPGGAGLPAAVSGSRLGYNNYFYGQLHVQAAPVGPACCGAVPPLGAQQCSCVPTPPGY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 PVAPGGAGLPAAVSGSRLGYNNYFYGQLHVQAAPVGPACCGAVPPLGAQQCSCVPTPPGY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 EGPGSVLVSPVPHQMLPYMNVGTLSRTELQLLNQLHCRRKRRHRTIFTDEQLEALENLFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 EGPGSVLVSPVPHQMLPYMNVGTLSRTELQLLNQLHCRRKRRHRTIFTDEQLEALENLFQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 ETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRQKRSSSEESENAEKWNKTSSSKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 ETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRQKRSSSEESENAEKWNKTSSSKA
              190       200       210       220       230       240

              250       
pF1KB7 SPEKREEEGKSDLDSDS
       :::::::::::::::::
CCDS99 SPEKREEEGKSDLDSDS
              250       

>>CCDS13757.1 GSC2 gene_id:2928|Hs108|chr22               (205 aa)
 initn: 420 init1: 332 opt: 373  Z-score: 307.7  bits: 64.2 E(32554): 8.1e-11
Smith-Waterman score: 373; 40.3% identity (58.7% similar) in 201 aa overlap (43-223:1-189)

             20        30        40        50        60            
pF1KB7 AARPRCKDSVLPVAHSAAAPVVFPALHGDSLYGASGGASSDYGAFYPRPVA---------
                                     . .:.:::.:  ::  : : .         
CCDS13                               MAAAAGGAASRRGAGRPCPFSIEHILSSLP
                                             10        20        30

                70        80        90       100       110         
pF1KB7 ----PGGAGLPAAVSGSRLGYNNYFYGQLHVQAAPVGPACCGAVPPLGAQQCSCVPTPPG
           :. :. :   .: .   .    :    .:::   :::    : .:    : : : .
CCDS13 ERSLPARAACPPQPAGRQSPAKPEEPGA--PEAAPC--ACCCCCGPRAAP---CGP-PEA
               40        50          60          70            80  

     120       130              140       150       160       170  
pF1KB7 YEGPGSVLVSP------VPHQM-LPYMNVGTLSRTELQLLNQLHCRRKRRHRTIFTDEQL
         : :. :. :      :: ..  :  . :.:  .    ..    :: :::::::..:::
CCDS13 AAGLGARLAWPLRLGPAVPLSLGAPAGGSGALPGA----VGPGSQRRTRRHRTIFSEEQL
             90       100       110           120       130        

            180       190       200       210       220       230  
pF1KB7 EALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRQKRSSSEESENAEKW
       .::: :: ...::::.:::.:: ...::::.:::::::::::::.:::.:.         
CCDS13 QALEALFVQNQYPDVSTRERLAGRIRLREERVEVWFKNRRAKWRHQKRASASARLLPGVK
      140       150       160       170       180       190        

            240       250       
pF1KB7 NKTSSSKASPEKREEEGKSDLDSDS
                                
CCDS13 KSPKGSC                  
      200                       




257 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 08:31:12 2016 done: Fri Nov  4 08:31:13 2016
 Total Scan time:  2.830 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]