Result of FASTA (omim) for
pF1KB7536
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7536, 257 aa
1>>>pF1KB7536 257 - 257 aa - 257 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.8501+/-0.0003; mu= 10.3603+/- 0.019
mean_var=183.5168+/-37.330, 0's: 0 Z-trim(122.7): 227 B-trim: 147 in 2/51
Lambda= 0.094675
statistics sampled from 41028 (41353) to 41028 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.815), E-opt: 0.2 (0.485), width: 16
Scan time: 8.320
The best scores are: opt bits E(85289)
NP_776248 (OMIM: 138890,602471) homeobox protein g ( 257) 1760 251.7 9.7e-67
NP_005306 (OMIM: 601845) homeobox protein goosecoi ( 205) 373 62.1 9e-10
NP_003915 (OMIM: 209880,603851,613013) paired meso ( 314) 312 54.0 3.8e-07
XP_016883326 (OMIM: 122000,148300,605020,614195) P ( 280) 295 51.6 1.8e-06
NP_001243201 (OMIM: 122000,148300,605020,614195) v ( 301) 295 51.7 1.9e-06
NP_055403 (OMIM: 122000,148300,605020,614195) visu ( 365) 295 51.8 2.1e-06
NP_878314 (OMIM: 142993,610092,610093) visual syst ( 361) 294 51.6 2.3e-06
NP_001263380 (OMIM: 606701) dorsal root ganglia ho ( 263) 291 51.0 2.5e-06
NP_038463 (OMIM: 601881,611038) retinal homeobox p ( 346) 289 50.9 3.6e-06
NP_005160 (OMIM: 602078,602753) paired mesoderm ho ( 284) 287 50.5 3.8e-06
NP_001306003 (OMIM: 605726,610362,610381,613757) r ( 230) 284 50.0 4.4e-06
XP_006713442 (OMIM: 182230,601802) PREDICTED: home ( 185) 280 49.4 5.6e-06
XP_011532506 (OMIM: 182230,601802) PREDICTED: home ( 185) 280 49.4 5.6e-06
XP_005265583 (OMIM: 182230,601802) PREDICTED: home ( 185) 280 49.4 5.6e-06
XP_011532507 (OMIM: 182230,601802) PREDICTED: home ( 185) 280 49.4 5.6e-06
NP_003856 (OMIM: 182230,601802) homeobox expressed ( 185) 280 49.4 5.6e-06
XP_016862910 (OMIM: 182230,601802) PREDICTED: home ( 185) 280 49.4 5.6e-06
XP_011537084 (OMIM: 601527,613456) PREDICTED: ALX ( 231) 277 49.1 8.6e-06
NP_005506 (OMIM: 142994,176450) motor neuron and p ( 401) 280 49.8 9.3e-06
NP_008913 (OMIM: 601527,613456) ALX homeobox prote ( 326) 277 49.2 1.1e-05
NP_001297089 (OMIM: 106210,120430,136520,148190,16 ( 286) 276 49.0 1.1e-05
NP_001297090 (OMIM: 106210,120430,136520,148190,16 ( 286) 276 49.0 1.1e-05
NP_006483 (OMIM: 136760,606014) homeobox protein a ( 343) 277 49.3 1.1e-05
NP_001297088 (OMIM: 106210,120430,136520,148190,16 ( 401) 276 49.2 1.4e-05
NP_000271 (OMIM: 106210,120430,136520,148190,16555 ( 422) 276 49.2 1.4e-05
NP_001245394 (OMIM: 106210,120430,136520,148190,16 ( 422) 276 49.2 1.4e-05
NP_001245393 (OMIM: 106210,120430,136520,148190,16 ( 422) 276 49.2 1.4e-05
NP_001121084 (OMIM: 106210,120430,136520,148190,16 ( 422) 276 49.2 1.4e-05
NP_001297087 (OMIM: 106210,120430,136520,148190,16 ( 436) 276 49.2 1.4e-05
NP_001245391 (OMIM: 106210,120430,136520,148190,16 ( 436) 276 49.2 1.4e-05
NP_001245392 (OMIM: 106210,120430,136520,148190,16 ( 436) 276 49.2 1.4e-05
NP_001595 (OMIM: 106210,120430,136520,148190,16555 ( 436) 276 49.2 1.4e-05
XP_016855778 (OMIM: 607410) PREDICTED: diencephalo ( 377) 274 48.9 1.6e-05
NP_757379 (OMIM: 607410) diencephalon/mesencephalo ( 377) 274 48.9 1.6e-05
XP_011538970 (OMIM: 607410) PREDICTED: diencephalo ( 377) 274 48.9 1.6e-05
NP_671725 (OMIM: 607410) diencephalon/mesencephalo ( 382) 274 48.9 1.6e-05
NP_116142 (OMIM: 605726,610362,610381,613757) reti ( 184) 268 47.7 1.7e-05
NP_000545 (OMIM: 120970,268000,602225,613829) cone ( 299) 270 48.2 2e-05
NP_703149 (OMIM: 300154) homeobox protein ESX1 [Ho ( 406) 270 48.4 2.4e-05
NP_068745 (OMIM: 605420,609597,613451,615529) home ( 411) 269 48.3 2.7e-05
NP_620689 (OMIM: 300004,300215,300382,300419,30835 ( 562) 269 48.4 3.3e-05
NP_758840 (OMIM: 600037,610125,613986) homeobox pr ( 289) 263 47.3 3.8e-05
NP_001257453 (OMIM: 600037,610125,613986) homeobox ( 289) 263 47.3 3.8e-05
NP_001257452 (OMIM: 600037,610125,613986) homeobox ( 289) 263 47.3 3.8e-05
NP_068374 (OMIM: 600037,610125,613986) homeobox pr ( 297) 263 47.3 3.8e-05
NP_001257454 (OMIM: 600037,610125,613986) homeobox ( 297) 263 47.3 3.8e-05
XP_011530329 (OMIM: 137600,180500,180550,601542,60 ( 271) 262 47.1 4e-05
NP_001191328 (OMIM: 137600,180500,180550,601542,60 ( 271) 262 47.1 4e-05
NP_700476 (OMIM: 137600,180500,180550,601542,60422 ( 271) 262 47.1 4e-05
NP_005020 (OMIM: 107250,602669,610623) pituitary h ( 302) 262 47.1 4.2e-05
>>NP_776248 (OMIM: 138890,602471) homeobox protein goose (257 aa)
initn: 1760 init1: 1760 opt: 1760 Z-score: 1319.1 bits: 251.7 E(85289): 9.7e-67
Smith-Waterman score: 1760; 100.0% identity (100.0% similar) in 257 aa overlap (1-257:1-257)
10 20 30 40 50 60
pF1KB7 MPASMFSIDNILAARPRCKDSVLPVAHSAAAPVVFPALHGDSLYGASGGASSDYGAFYPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_776 MPASMFSIDNILAARPRCKDSVLPVAHSAAAPVVFPALHGDSLYGASGGASSDYGAFYPR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 PVAPGGAGLPAAVSGSRLGYNNYFYGQLHVQAAPVGPACCGAVPPLGAQQCSCVPTPPGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_776 PVAPGGAGLPAAVSGSRLGYNNYFYGQLHVQAAPVGPACCGAVPPLGAQQCSCVPTPPGY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 EGPGSVLVSPVPHQMLPYMNVGTLSRTELQLLNQLHCRRKRRHRTIFTDEQLEALENLFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_776 EGPGSVLVSPVPHQMLPYMNVGTLSRTELQLLNQLHCRRKRRHRTIFTDEQLEALENLFQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 ETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRQKRSSSEESENAEKWNKTSSSKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_776 ETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRQKRSSSEESENAEKWNKTSSSKA
190 200 210 220 230 240
250
pF1KB7 SPEKREEEGKSDLDSDS
:::::::::::::::::
NP_776 SPEKREEEGKSDLDSDS
250
>>NP_005306 (OMIM: 601845) homeobox protein goosecoid-2 (205 aa)
initn: 420 init1: 332 opt: 373 Z-score: 296.4 bits: 62.1 E(85289): 9e-10
Smith-Waterman score: 373; 40.3% identity (58.7% similar) in 201 aa overlap (43-223:1-189)
20 30 40 50 60
pF1KB7 AARPRCKDSVLPVAHSAAAPVVFPALHGDSLYGASGGASSDYGAFYPRPVA---------
. .:.:::.: :: : : .
NP_005 MAAAAGGAASRRGAGRPCPFSIEHILSSLP
10 20 30
70 80 90 100 110
pF1KB7 ----PGGAGLPAAVSGSRLGYNNYFYGQLHVQAAPVGPACCGAVPPLGAQQCSCVPTPPG
:. :. : .: . . : .::: ::: : .: : : : .
NP_005 ERSLPARAACPPQPAGRQSPAKPEEPGA--PEAAPC--ACCCCCGPRAAP---CGP-PEA
40 50 60 70 80
120 130 140 150 160 170
pF1KB7 YEGPGSVLVSP------VPHQM-LPYMNVGTLSRTELQLLNQLHCRRKRRHRTIFTDEQL
: :. :. : :: .. : . :.: . .. :: :::::::..:::
NP_005 AAGLGARLAWPLRLGPAVPLSLGAPAGGSGALPGA----VGPGSQRRTRRHRTIFSEEQL
90 100 110 120 130
180 190 200 210 220 230
pF1KB7 EALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRQKRSSSEESENAEKW
.::: :: ...::::.:::.:: ...::::.:::::::::::::.:::.:.
NP_005 QALEALFVQNQYPDVSTRERLAGRIRLREERVEVWFKNRRAKWRHQKRASASARLLPGVK
140 150 160 170 180 190
240 250
pF1KB7 NKTSSSKASPEKREEEGKSDLDSDS
NP_005 KSPKGSC
200
>>NP_003915 (OMIM: 209880,603851,613013) paired mesoderm (314 aa)
initn: 302 init1: 283 opt: 312 Z-score: 249.2 bits: 54.0 E(85289): 3.8e-07
Smith-Waterman score: 312; 42.8% identity (66.7% similar) in 138 aa overlap (123-257:62-194)
100 110 120 130 140 150
pF1KB7 APVGPACCGAVPPLGAQQCSCVPTPPGYEGPGSVLVSPV-PHQMLPYMNVGTLSRTELQL
::: .. . :: :: : :.
NP_003 DFSSCSQASGFQYNPIRTTFGATSGCPSLTPGSCSLGTLRDHQSSPYAAVPYKLFTDHGG
40 50 60 70 80 90
160 170 180 190 200 210
pF1KB7 LNQLHCRRKRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNR
::. :..:: :: ::. ::. :: .: ::.:::. :::.:: :. : : .:.:::.::
NP_003 LNEK--RKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNR
100 110 120 130 140
220 230 240 250
pF1KB7 RAKWRRQKRSSSEESENAEKWNKTSSSKASPEKREEEGK--SDLDSDS
:::.:.:.:... . :.. ::.: : .:..:.: .. : ::
NP_003 RAKFRKQERAAAAAAAAAKN---GSSGKKSDSSRDDESKEAKSTDPDSTGGPGPNPNPTP
150 160 170 180 190 200
NP_003 SCGANGGGGGGPSPAGAPGAAGPGGPGGEPGKGGAAAAAAAAAAAAAAAAAAAAGGLAAA
210 220 230 240 250 260
>>XP_016883326 (OMIM: 122000,148300,605020,614195) PREDI (280 aa)
initn: 324 init1: 274 opt: 295 Z-score: 237.3 bits: 51.6 E(85289): 1.8e-06
Smith-Waterman score: 310; 38.3% identity (60.6% similar) in 188 aa overlap (56-220:41-225)
30 40 50 60 70 80
pF1KB7 AHSAAAPVVFPALHGDSLYGASGGASSDYGAFYPRPVAPG-GAGL--PAAVSGSRLGYNN
: : :..:: :.: ::.. : ..
XP_016 RTSSRALVPGGSPRGSRPRGFAITDLLGLEAELPAPAGPGQGSGCEGPAVAPCPGPGLDG
20 30 40 50 60 70
90 100 110 120 130
pF1KB7 YFYGQLHVQAAPVGPAC-CG-AVPPLGAQQCSC-----VP-TPPGYEGPGSVLVSPVPHQ
..: : :.: . :: .. : .: . : :: :: :.. :. :
XP_016 ---SSLARGALPLGLGLLCGFGTQPPAAARAPCLLLADVPFLPPRGPEPAAPLAPSRPPP
80 90 100 110 120
140 150 160 170 180
pF1KB7 MLPYM----NVGTLS-------RTELQLLNQLHCRRKRRHRTIFTDEQLEALENLFQETK
: . .:.: . :..:. : :.::::::.:: .::: ::. :.:..
XP_016 ALGRQKRSDSVSTSDEDSQSEDRNDLKASPTLGKRKKRRHRTVFTAHQLEELEKAFSEAH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 YPDVGTREQLARKVHLREEKVEVWFKNRRAKWR-RQKRSSSEESENAEKWNKTSSSKASP
:::: .::.:: :..: :....:::.::::::: :.::
XP_016 YPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRKREKRWGGSSVMAEYGLYGAMVRHCIP
190 200 210 220 230 240
250
pF1KB7 EKREEEGKSDLDSDS
XP_016 LPDSVLNSAEGGLLGSCAPWLLEGETLGCREMK
250 260 270 280
>>NP_001243201 (OMIM: 122000,148300,605020,614195) visua (301 aa)
initn: 324 init1: 274 opt: 295 Z-score: 236.9 bits: 51.7 E(85289): 1.9e-06
Smith-Waterman score: 310; 38.3% identity (60.6% similar) in 188 aa overlap (56-220:41-225)
30 40 50 60 70 80
pF1KB7 AHSAAAPVVFPALHGDSLYGASGGASSDYGAFYPRPVAPG-GAGL--PAAVSGSRLGYNN
: : :..:: :.: ::.. : ..
NP_001 RTSSRALVPGGSPRGSRPRGFAITDLLGLEAELPAPAGPGQGSGCEGPAVAPCPGPGLDG
20 30 40 50 60 70
90 100 110 120 130
pF1KB7 YFYGQLHVQAAPVGPAC-CG-AVPPLGAQQCSC-----VP-TPPGYEGPGSVLVSPVPHQ
..: : :.: . :: .. : .: . : :: :: :.. :. :
NP_001 ---SSLARGALPLGLGLLCGFGTQPPAAARAPCLLLADVPFLPPRGPEPAAPLAPSRPPP
80 90 100 110 120
140 150 160 170 180
pF1KB7 MLPYM----NVGTLS-------RTELQLLNQLHCRRKRRHRTIFTDEQLEALENLFQETK
: . .:.: . :..:. : :.::::::.:: .::: ::. :.:..
NP_001 ALGRQKRSDSVSTSDEDSQSEDRNDLKASPTLGKRKKRRHRTVFTAHQLEELEKAFSEAH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 YPDVGTREQLARKVHLREEKVEVWFKNRRAKWR-RQKRSSSEESENAEKWNKTSSSKASP
:::: .::.:: :..: :....:::.::::::: :.::
NP_001 YPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRKREKRWGGSSVMAEYGLYGAMVRHCIP
190 200 210 220 230 240
250
pF1KB7 EKREEEGKSDLDSDS
NP_001 LPDSVLNSAEGGLLGSCAPWLLVQTSAPGGSRSLDFAGDTQAPQTPWWCLMTFS
250 260 270 280 290 300
>>NP_055403 (OMIM: 122000,148300,605020,614195) visual s (365 aa)
initn: 344 init1: 274 opt: 295 Z-score: 235.9 bits: 51.8 E(85289): 2.1e-06
Smith-Waterman score: 310; 38.3% identity (60.6% similar) in 188 aa overlap (56-220:41-225)
30 40 50 60 70 80
pF1KB7 AHSAAAPVVFPALHGDSLYGASGGASSDYGAFYPRPVAPG-GAGL--PAAVSGSRLGYNN
: : :..:: :.: ::.. : ..
NP_055 RTSSRALVPGGSPRGSRPRGFAITDLLGLEAELPAPAGPGQGSGCEGPAVAPCPGPGLDG
20 30 40 50 60 70
90 100 110 120 130
pF1KB7 YFYGQLHVQAAPVGPAC-CG-AVPPLGAQQCSC-----VP-TPPGYEGPGSVLVSPVPHQ
..: : :.: . :: .. : .: . : :: :: :.. :. :
NP_055 ---SSLARGALPLGLGLLCGFGTQPPAAARAPCLLLADVPFLPPRGPEPAAPLAPSRPPP
80 90 100 110 120
140 150 160 170 180
pF1KB7 MLPYM----NVGTLS-------RTELQLLNQLHCRRKRRHRTIFTDEQLEALENLFQETK
: . .:.: . :..:. : :.::::::.:: .::: ::. :.:..
NP_055 ALGRQKRSDSVSTSDEDSQSEDRNDLKASPTLGKRKKRRHRTVFTAHQLEELEKAFSEAH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 YPDVGTREQLARKVHLREEKVEVWFKNRRAKWR-RQKRSSSEESENAEKWNKTSSSKASP
:::: .::.:: :..: :....:::.::::::: :.::
NP_055 YPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRKREKRWGGSSVMAEYGLYGAMVRHCIP
190 200 210 220 230 240
250
pF1KB7 EKREEEGKSDLDSDS
NP_055 LPDSVLNSAEGGLLGSCAPWLLGMHKKSMGMIRKPGSEDKLAGLWGSDHFKEGSSQSESG
250 260 270 280 290 300
>>NP_878314 (OMIM: 142993,610092,610093) visual system h (361 aa)
initn: 315 init1: 294 opt: 294 Z-score: 235.2 bits: 51.6 E(85289): 2.3e-06
Smith-Waterman score: 310; 34.2% identity (58.3% similar) in 199 aa overlap (47-230:22-218)
20 30 40 50 60 70
pF1KB7 RCKDSVLPVAHSAAAPVVFPALHGDSLYGASGGASSDYGAFYPRPVAPGGAGLPAAVSGS
:::: . .: . . : . :
NP_878 MTGKAGEALSKPKSETVAKSTSGGAPARCTGFGIQEIL--GLNKEPPSSHP
10 20 30 40
80 90 100 110 120 130
pF1KB7 RLGYNNYFYGQLHVQAAPVGPACCGAVPPLGAQQCSCVPTPPGY----EGPGSVLVSPVP
: . .. :.: . . ..:: :.. :: : : . : :: ..:.
NP_878 RAALDGLAPGHLLAARSVLSPAGVGGMGLLGPGGLPGFYTQPTFLEVLSDPQSVHLQPLG
50 60 70 80 90 100
140 150 160 170 180
pF1KB7 HQMLPYMNVGT-------LSRTELQL----LNQLHCRRKRRHRTIFTDEQLEALENLFQE
. : . : .: .. .. ::: . :.:::::::::. ::: ::. :.:
NP_878 RASGPLDTSQTASSDSEDVSSSDRKMSKSALNQTKKRKKRRHRTIFTSYQLEELEKAFNE
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB7 TKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRQKRSSSEESENAEKWNKTSSSKAS
..:::: .::.:: :..: :....:::.:::::::.... .. : ::
NP_878 AHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKCWGRSSVMAEYGLYGAMVRHS
170 180 190 200 210 220
250
pF1KB7 PEKREEEGKSDLDSDS
NP_878 IPLPESILKSAKDGIMDSCAPWLLGMHKKSLEAAAESGRKPEGERQALPKLDKMEQDERG
230 240 250 260 270 280
>>NP_001263380 (OMIM: 606701) dorsal root ganglia homeob (263 aa)
initn: 314 init1: 279 opt: 291 Z-score: 234.6 bits: 51.0 E(85289): 2.5e-06
Smith-Waterman score: 291; 55.4% identity (85.1% similar) in 74 aa overlap (158-231:31-104)
130 140 150 160 170 180
pF1KB7 VSPVPHQMLPYMNVGTLSRTELQLLNQLHCRRKRRHRTIFTDEQLEALENLFQETKYPDV
:..::.:: :: .:::::: .: .:.::::
NP_001 MFYFHCPPQLEGTATFGNHSSGDFDDGFLRRKQRRNRTTFTLQQLEALEAVFAQTHYPDV
10 20 30 40 50 60
190 200 210 220 230 240
pF1KB7 GTREQLARKVHLREEKVEVWFKNRRAKWRRQKRSSSEESENAEKWNKTSSSKASPEKREE
:::.:: :..: : .:.:::.:::::::. .:..:.. .:..
NP_001 FTREELAMKINLTEARVQVWFQNRRAKWRKTERGASDQEPGAKEPMAEVTPPPVRNINSP
70 80 90 100 110 120
250
pF1KB7 EGKSDLDSDS
NP_001 PPGDQARSKKEALEAQQSLGRTVGPAGPFFPSCLPGTLLNTATYAQALSHVASLKGGPLC
130 140 150 160 170 180
>>NP_038463 (OMIM: 601881,611038) retinal homeobox prote (346 aa)
initn: 279 init1: 255 opt: 289 Z-score: 231.8 bits: 50.9 E(85289): 3.6e-06
Smith-Waterman score: 289; 40.6% identity (63.2% similar) in 133 aa overlap (97-220:71-196)
70 80 90 100 110 120
pF1KB7 AGLPAAVSGSRLGYNNYFYGQLHVQAAPVGPACCGAVPPLGAQQCSCVPTPPGYEGPGSV
::: : : :.. :.:: .:.
NP_038 FTKDDGILGTFPAERGARGAKERDRRLGARPACPKA-PEEGSE-----PSPPPAPAPAPE
50 60 70 80 90
130 140 150 160 170
pF1KB7 LVSPVPH--------QMLPYMNVGTLSRTELQLLNQLHCRRK-RRHRTIFTDEQLEALEN
.: :. . : . :: . : .: .. . ..: ::.:: :: ::. ::
NP_038 YEAPRPYCPKEPGEARPSPGLPVGP-ATGEAKLSEEEQPKKKHRRNRTTFTTYQLHELER
100 110 120 130 140 150
180 190 200 210 220 230
pF1KB7 LFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRQKRSSSEESENAEKWNKTSS
:....:::: .::.:: ::.: : .:.:::.:::::::::..
NP_038 AFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRRQEKLEVSSMKLQDSPLLSFS
160 170 180 190 200 210
240 250
pF1KB7 SKASPEKREEEGKSDLDSDS
NP_038 RSPPSATLSPLGAGPGSGGGPAGGALPLESWLGPPLPGGGATALQSLPGFGPPAQSLPAS
220 230 240 250 260 270
>>NP_005160 (OMIM: 602078,602753) paired mesoderm homeob (284 aa)
initn: 272 init1: 251 opt: 287 Z-score: 231.3 bits: 50.5 E(85289): 3.8e-06
Smith-Waterman score: 299; 38.2% identity (60.5% similar) in 157 aa overlap (91-243:34-173)
70 80 90 100 110
pF1KB7 PVAPGGAGLPAAVSGSRLGYNNYFYGQLHVQAAPVGPACCGAVPP---LGAQQCSCVPTP
: .:. :: .: :: ::...:.
NP_005 SYLNSYDSCVAAMEASAYGDFGACSQPGGFQYSPLRPAFPAAGPPCPALGSSNCALGALR
10 20 30 40 50 60
120 130 140 150 160 170
pF1KB7 PGYEGPGSVLVSPVPHQMLPYMNVGTLSRTELQLLNQLHCRRK-RRHRTIFTDEQLEALE
.: : ::....: . : :: .:: :: :: ::. ::. ::
NP_005 DHQPAP----YSAVPYKFFPEPS-G------------LHEKRKQRRIRTTFTSAQLKELE
70 80 90 100
180 190 200 210 220 230
pF1KB7 NLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRQKRSSSEESENAEKWNKTS
.: ::.:::. :::.:: :. : : .:.:::.:::::.:.:.:..: .. . : .
NP_005 RVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQERAASAKGAAGAAGAKKG
110 120 130 140 150 160
240 250
pF1KB7 SSKASPEKREEEGKSDLDSDS
.. : :
NP_005 EARCSSEDDDSKESTCSPTPDSTASLPPPPAPGLASPRLSPSPLPVALGSGPGPGPGPQP
170 180 190 200 210 220
257 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 08:31:13 2016 done: Fri Nov 4 08:31:14 2016
Total Scan time: 8.320 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]