FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7537, 173 aa
  1>>>pF1KB7537 173 - 173 aa - 173 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.3345+/-0.000707; mu= 3.0168+/- 0.043
 mean_var=227.3144+/-45.412, 0's: 0 Z-trim(118.5): 16  B-trim: 0 in 0/53
 Lambda= 0.085067
 statistics sampled from 19446 (19462) to 19446 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.87), E-opt: 0.2 (0.598), width:  16
 Scan time:  2.380

The best scores are:                                      opt bits E(32554)
CCDS30574.1 HES2 gene_id:54626|Hs108|chr1          ( 173) 1179 155.5 1.5e-38


>>CCDS30574.1 HES2 gene_id:54626|Hs108|chr1               (173 aa)
 initn: 1179 init1: 1179 opt: 1179  Z-score: 805.5  bits: 155.5 E(32554): 1.5e-38
Smith-Waterman score: 1179; 99.4% identity (99.4% similar) in 173 aa overlap (1-173:1-173)

               10        20        30        40        50        60
pF1KB7 MGLPRRAGDAAELRKSLKPLLEKRRRARINQSLSQLKGLILPLLGRENSNCSKLEKADVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MGLPRRAGDAAELRKSLKPLLEKRRRARINQSLSQLKGLILPLLGRENSNCSKLEKADVL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 EMTVRFLQELPASSWPTAAPLPCDSYREGYSACVARLARVLPACRVLEPAVSARLLEHLW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 EMTVRFLQELPASSWPTAAPLPCDSYREGYSACVARLARVLPACRVLEPAVSARLLEHLW
               70        80        90       100       110       120

              130       140       150       160       170   
pF1KB7 RRAASATLDGGRAGDSSGSSAPAPAPASAPEPASAPVPSPPSPPCGPGLWRPW
       :::::::::::::::::: ::::::::::::::::::::::::::::::::::
CCDS30 RRAASATLDGGRAGDSSGPSAPAPAPASAPEPASAPVPSPPSPPCGPGLWRPW
              130       140       150       160       170   




173 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 08:31:47 2016 done: Fri Nov  4 08:31:47 2016
 Total Scan time:  2.380 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]