FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7538, 258 aa
  1>>>pF1KB7538 258 - 258 aa - 258 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.0150+/-0.000745; mu= 7.3994+/- 0.045
 mean_var=109.9209+/-22.345, 0's: 0 Z-trim(113.1): 12  B-trim: 267 in 1/49
 Lambda= 0.122330
 statistics sampled from 13758 (13767) to 13758 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.78), E-opt: 0.2 (0.423), width:  16
 Scan time:  2.660

The best scores are:                                      opt bits E(32554)
CCDS14658.1 VGLL1 gene_id:51442|Hs108|chrX         ( 258) 1788 325.5 2.3e-89


>>CCDS14658.1 VGLL1 gene_id:51442|Hs108|chrX              (258 aa)
 initn: 1788 init1: 1788 opt: 1788  Z-score: 1717.9  bits: 325.5 E(32554): 2.3e-89
Smith-Waterman score: 1788; 100.0% identity (100.0% similar) in 258 aa overlap (1-258:1-258)

               10        20        30        40        50        60
pF1KB7 MEEMKKTAIRLPKGKQKPIKTEWNSRCVLFTYFQGDISSVVDEHFSRALSNIKSPQELTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MEEMKKTAIRLPKGKQKPIKTEWNSRCVLFTYFQGDISSVVDEHFSRALSNIKSPQELTP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 SSQSEGVMLKNDDSMSPNQWRYSSPWTKPQPEVPVTNRAANCNLHVPGPMAVNQFSPSLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 SSQSEGVMLKNDDSMSPNQWRYSSPWTKPQPEVPVTNRAANCNLHVPGPMAVNQFSPSLA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 RRASVRPGELWHFSSLAGTSSLEPGYSHPFPARHLVPEPQPDGKREPLLSLLQQDRCLAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 RRASVRPGELWHFSSLAGTSSLEPGYSHPFPARHLVPEPQPDGKREPLLSLLQQDRCLAR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 PQESAARENGNPGQIAGSTGLLFNLPPGSVHYKKLYVSRGSASTSLPNETLSELETPGKY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PQESAARENGNPGQIAGSTGLLFNLPPGSVHYKKLYVSRGSASTSLPNETLSELETPGKY
              190       200       210       220       230       240

              250        
pF1KB7 SLTPPNHWGHPHRYLQHL
       ::::::::::::::::::
CCDS14 SLTPPNHWGHPHRYLQHL
              250        




258 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 08:32:11 2016 done: Fri Nov  4 08:32:12 2016
 Total Scan time:  2.660 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]