Result of FASTA (omim) for
pF1KB7538
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7538, 258 aa
1>>>pF1KB7538 258 - 258 aa - 258 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.1817+/-0.000302; mu= 6.7779+/- 0.019
mean_var=118.7945+/-23.919, 0's: 0 Z-trim(120.7): 8 B-trim: 0 in 0/57
Lambda= 0.117673
statistics sampled from 36268 (36276) to 36268 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.784), E-opt: 0.2 (0.425), width: 16
Scan time: 6.570
The best scores are: opt bits E(85289)
NP_057351 (OMIM: 300583) transcription cofactor ve ( 258) 1788 313.7 2.1e-85
NP_872586 (OMIM: 609979) transcription cofactor ve ( 317) 230 49.3 1e-05
XP_005266940 (OMIM: 609979) PREDICTED: transcripti ( 318) 230 49.3 1e-05
NP_001307422 (OMIM: 609980) transcription cofactor ( 320) 218 47.2 4.3e-05
XP_006713201 (OMIM: 609980) PREDICTED: transcripti ( 325) 218 47.2 4.3e-05
NP_057290 (OMIM: 609980) transcription cofactor ve ( 326) 218 47.2 4.3e-05
NP_703154 (OMIM: 609979) transcription cofactor ve ( 143) 205 44.8 0.0001
>>NP_057351 (OMIM: 300583) transcription cofactor vestig (258 aa)
initn: 1788 init1: 1788 opt: 1788 Z-score: 1654.3 bits: 313.7 E(85289): 2.1e-85
Smith-Waterman score: 1788; 100.0% identity (100.0% similar) in 258 aa overlap (1-258:1-258)
10 20 30 40 50 60
pF1KB7 MEEMKKTAIRLPKGKQKPIKTEWNSRCVLFTYFQGDISSVVDEHFSRALSNIKSPQELTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MEEMKKTAIRLPKGKQKPIKTEWNSRCVLFTYFQGDISSVVDEHFSRALSNIKSPQELTP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 SSQSEGVMLKNDDSMSPNQWRYSSPWTKPQPEVPVTNRAANCNLHVPGPMAVNQFSPSLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 SSQSEGVMLKNDDSMSPNQWRYSSPWTKPQPEVPVTNRAANCNLHVPGPMAVNQFSPSLA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 RRASVRPGELWHFSSLAGTSSLEPGYSHPFPARHLVPEPQPDGKREPLLSLLQQDRCLAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 RRASVRPGELWHFSSLAGTSSLEPGYSHPFPARHLVPEPQPDGKREPLLSLLQQDRCLAR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 PQESAARENGNPGQIAGSTGLLFNLPPGSVHYKKLYVSRGSASTSLPNETLSELETPGKY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 PQESAARENGNPGQIAGSTGLLFNLPPGSVHYKKLYVSRGSASTSLPNETLSELETPGKY
190 200 210 220 230 240
250
pF1KB7 SLTPPNHWGHPHRYLQHL
::::::::::::::::::
NP_057 SLTPPNHWGHPHRYLQHL
250
>>NP_872586 (OMIM: 609979) transcription cofactor vestig (317 aa)
initn: 217 init1: 184 opt: 230 Z-score: 223.5 bits: 49.3 E(85289): 1e-05
Smith-Waterman score: 251; 33.8% identity (51.8% similar) in 228 aa overlap (15-210:72-294)
10 20 30 40
pF1KB7 MEEMKKTAIRLPKGKQKPIKTEW-NSRCVLFTYFQGDISSVVDE
:..: ..:. ::::::::::::::::::::
NP_872 NASPSSSGSGSSSFSSQTPASIKEEEGSPEKERPPEAEYINSRCVLFTYFQGDISSVVDE
50 60 70 80 90 100
50 60 70 80 90
pF1KB7 HFSRALSNIKSPQELTPSSQSEGVMLKND---DSMSPNQWRY--SSPWTKP-QPEVPVTN
::::::: .:. .:: : . .. : : . : .: :.. : ::
NP_872 HFSRALS---QPSSYSPSCTSSKAPRSSGPWRDCSFPMSQRSFPASFWNSAYQAPVPPPL
110 120 130 140 150
100 110 120 130 140
pF1KB7 RAANCNLHVPGPMAV-NQFSPSLARRASVRPG--ELWHFSSLAGTSSLEP--------GY
. . : :.:. . .::. : .. .. : : :: . . .: .
NP_872 GSPLATAHSELPFAAADPYSPA-ALHGHLHQGATEPWHHAHPHHAHPHHPYALGGALGAQ
160 170 180 190 200 210
150 160 170 180 190
pF1KB7 SHPFP---ARHLVPEPQPDGKREPLLSLLQQDRCLARPQESAARENGNP-------GQIA
. :.: : : : :. : . ::: . : :: . : :.: :. :
NP_872 AAPYPRPAAVHEVYAPHFDPRYGPLLMPAASGRP-ARLATAPAPAPGSPPCELSGKGEPA
220 230 240 250 260 270
200 210 220 230 240 250
pF1KB7 GST----GLLFNLPPGSVHYKKLYVSRGSASTSLPNETLSELETPGKYSLTPPNHWGHPH
:.. : : : :.:
NP_872 GAAWAGPGGPFASPSGDVAQGLGLSVDSARRYSLCGASLLS
280 290 300 310
>>XP_005266940 (OMIM: 609979) PREDICTED: transcription c (318 aa)
initn: 217 init1: 184 opt: 230 Z-score: 223.5 bits: 49.3 E(85289): 1e-05
Smith-Waterman score: 251; 33.8% identity (51.8% similar) in 228 aa overlap (15-210:72-294)
10 20 30 40
pF1KB7 MEEMKKTAIRLPKGKQKPIKTEW-NSRCVLFTYFQGDISSVVDE
:..: ..:. ::::::::::::::::::::
XP_005 NASPSSSGSGSSSFSSQTPASIKEEEGSPEKERPPEAEYINSRCVLFTYFQGDISSVVDE
50 60 70 80 90 100
50 60 70 80 90
pF1KB7 HFSRALSNIKSPQELTPSSQSEGVMLKND---DSMSPNQWRY--SSPWTKP-QPEVPVTN
::::::: .:. .:: : . .. : : . : .: :.. : ::
XP_005 HFSRALS---QPSSYSPSCTSSKAPRSSGPWRDCSFPMSQRSFPASFWNSAYQAPVPPPL
110 120 130 140 150
100 110 120 130 140
pF1KB7 RAANCNLHVPGPMAV-NQFSPSLARRASVRPG--ELWHFSSLAGTSSLEP--------GY
. . : :.:. . .::. : .. .. : : :: . . .: .
XP_005 GSPLATAHSELPFAAADPYSPA-ALHGHLHQGATEPWHHAHPHHAHPHHPYALGGALGAQ
160 170 180 190 200 210
150 160 170 180 190
pF1KB7 SHPFP---ARHLVPEPQPDGKREPLLSLLQQDRCLARPQESAARENGNP-------GQIA
. :.: : : : :. : . ::: . : :: . : :.: :. :
XP_005 AAPYPRPAAVHEVYAPHFDPRYGPLLMPAASGRP-ARLATAPAPAPGSPPCELSGKGEPA
220 230 240 250 260 270
200 210 220 230 240 250
pF1KB7 GST----GLLFNLPPGSVHYKKLYVSRGSASTSLPNETLSELETPGKYSLTPPNHWGHPH
:.. : : : :.:
XP_005 GAAWAGPGGPFASPSGDVAQGLGLSVDSGLQPQDKSKDVYWF
280 290 300 310
>>NP_001307422 (OMIM: 609980) transcription cofactor ves (320 aa)
initn: 251 init1: 170 opt: 218 Z-score: 212.5 bits: 47.2 E(85289): 4.3e-05
Smith-Waterman score: 222; 36.2% identity (60.1% similar) in 163 aa overlap (15-157:75-232)
10 20 30 40
pF1KB7 MEEMKKTAIRLPKGKQKPIKTEW-NSRCVLFTYFQGDISSVVDE
:..: . :. ::::::::::::::.:::::
NP_001 LAVFSKMQDSLEVTLPSKQEEEDEEEEEEEKDQPAEMEYLNSRCVLFTYFQGDIGSVVDE
50 60 70 80 90 100
50 60 70 80 90
pF1KB7 HFSRALSNIKSPQELTPSSQSE-GVMLKNDDSMSPNQWRYSSP---WT---KPQPEVPVT
::::::.. . . . :.:. :. :: . .. : : : :: .: : .:
NP_001 HFSRALGQAITLHPESAISKSKMGLTPLWRDSSALSSQRNSFPTSFWTSSYQPPP-APCL
110 120 130 140 150 160
100 110 120 130 140
pF1KB7 NRAANCNLHVPGP---MAVNQFSP----SLARRASVRP---GELWHFSSLAGTSSLEPGY
. ... ...: :: ... . :: .: . . . : .: : . ::.. :.:
NP_001 G-GVHPDFQVTGPPGTFSAADPSPWPGHNLHQTGPAPPPAVSESWPYPL---TSQVSPSY
170 180 190 200 210
150 160 170 180 190 200
pF1KB7 SHPFPA--RHLVPEPQPDGKREPLLSLLQQDRCLARPQESAARENGNPGQIAGSTGLLFN
:: . :: :
NP_001 SHMHDVYMRHHHPHAHMHHRHRHHHHHHHPPAGSALDPSYGPLLMPSVHAARIPAPQCDI
220 230 240 250 260 270
>>XP_006713201 (OMIM: 609980) PREDICTED: transcription c (325 aa)
initn: 251 init1: 170 opt: 218 Z-score: 212.3 bits: 47.2 E(85289): 4.3e-05
Smith-Waterman score: 222; 36.2% identity (60.1% similar) in 163 aa overlap (15-157:74-231)
10 20 30 40
pF1KB7 MEEMKKTAIRLPKGKQKPIKTEW-NSRCVLFTYFQGDISSVVDE
:..: . :. ::::::::::::::.:::::
XP_006 LAVFSKMQDSLEVTLPSKQEEEDEEEEEEEKDQPAEMEYLNSRCVLFTYFQGDIGSVVDE
50 60 70 80 90 100
50 60 70 80 90
pF1KB7 HFSRALSNIKSPQELTPSSQSE-GVMLKNDDSMSPNQWRYSSP---WT---KPQPEVPVT
::::::.. . . . :.:. :. :: . .. : : : :: .: : .:
XP_006 HFSRALGQAITLHPESAISKSKMGLTPLWRDSSALSSQRNSFPTSFWTSSYQPPP-APCL
110 120 130 140 150 160
100 110 120 130 140
pF1KB7 NRAANCNLHVPGP---MAVNQFSP----SLARRASVRP---GELWHFSSLAGTSSLEPGY
. ... ...: :: ... . :: .: . . . : .: : . ::.. :.:
XP_006 G-GVHPDFQVTGPPGTFSAADPSPWPGHNLHQTGPAPPPAVSESWPYPL---TSQVSPSY
170 180 190 200 210
150 160 170 180 190 200
pF1KB7 SHPFPA--RHLVPEPQPDGKREPLLSLLQQDRCLARPQESAARENGNPGQIAGSTGLLFN
:: . :: :
XP_006 SHMHDVYMRHHHPHAHMHHRHRHHHHHHHPPAGSALDPSYGPLLMPSVHAARIPAPQCDI
220 230 240 250 260 270
>>NP_057290 (OMIM: 609980) transcription cofactor vestig (326 aa)
initn: 251 init1: 170 opt: 218 Z-score: 212.3 bits: 47.2 E(85289): 4.3e-05
Smith-Waterman score: 222; 36.2% identity (60.1% similar) in 163 aa overlap (15-157:75-232)
10 20 30 40
pF1KB7 MEEMKKTAIRLPKGKQKPIKTEW-NSRCVLFTYFQGDISSVVDE
:..: . :. ::::::::::::::.:::::
NP_057 LAVFSKMQDSLEVTLPSKQEEEDEEEEEEEKDQPAEMEYLNSRCVLFTYFQGDIGSVVDE
50 60 70 80 90 100
50 60 70 80 90
pF1KB7 HFSRALSNIKSPQELTPSSQSE-GVMLKNDDSMSPNQWRYSSP---WT---KPQPEVPVT
::::::.. . . . :.:. :. :: . .. : : : :: .: : .:
NP_057 HFSRALGQAITLHPESAISKSKMGLTPLWRDSSALSSQRNSFPTSFWTSSYQPPP-APCL
110 120 130 140 150 160
100 110 120 130 140
pF1KB7 NRAANCNLHVPGP---MAVNQFSP----SLARRASVRP---GELWHFSSLAGTSSLEPGY
. ... ...: :: ... . :: .: . . . : .: : . ::.. :.:
NP_057 G-GVHPDFQVTGPPGTFSAADPSPWPGHNLHQTGPAPPPAVSESWPYPL---TSQVSPSY
170 180 190 200 210
150 160 170 180 190 200
pF1KB7 SHPFPA--RHLVPEPQPDGKREPLLSLLQQDRCLARPQESAARENGNPGQIAGSTGLLFN
:: . :: :
NP_057 SHMHDVYMRHHHPHAHMHHRHRHHHHHHHPPAGSALDPSYGPLLMPSVHAARIPAPQCDI
220 230 240 250 260 270
>>NP_703154 (OMIM: 609979) transcription cofactor vestig (143 aa)
initn: 205 init1: 184 opt: 205 Z-score: 205.8 bits: 44.8 E(85289): 0.0001
Smith-Waterman score: 210; 54.8% identity (68.5% similar) in 73 aa overlap (15-86:72-129)
10 20 30 40
pF1KB7 MEEMKKTAIRLPKGKQKPIKTEW-NSRCVLFTYFQGDISSVVDE
:..: ..:. ::::::::::::::::::::
NP_703 NASPSSSGSGSSSFSSQTPASIKEEEGSPEKERPPEAEYINSRCVLFTYFQGDISSVVDE
50 60 70 80 90 100
50 60 70 80 90 100
pF1KB7 HFSRALSNIKSPQELTPSSQSEGVMLKNDDSMSPNQWRYSSPWTKPQPEVPVTNRAANCN
:::::::. :. .:: : : .: : :.::
NP_703 HFSRALSQ---PSSYSPSCTS---------SKAP---RSSGPWRARRYSLCGASLLS
110 120 130 140
110 120 130 140 150 160
pF1KB7 LHVPGPMAVNQFSPSLARRASVRPGELWHFSSLAGTSSLEPGYSHPFPARHLVPEPQPDG
258 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 08:32:12 2016 done: Fri Nov 4 08:32:13 2016
Total Scan time: 6.570 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]