Result of FASTA (omim) for
pF1KB7539
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7539, 177 aa
1>>>pF1KB7539 177 - 177 aa - 177 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.1977+/-0.000394; mu= 11.6347+/- 0.025
mean_var=200.8231+/-41.733, 0's: 0 Z-trim(119.1): 38 B-trim: 0 in 0/53
Lambda= 0.090504
statistics sampled from 32749 (32789) to 32749 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.723), E-opt: 0.2 (0.384), width: 16
Scan time: 5.510
The best scores are: opt bits E(85289)
NP_003409 (OMIM: 116955,602668) cellular nucleic a ( 177) 1347 187.3 1.1e-47
NP_001120665 (OMIM: 116955,602668) cellular nuclei ( 178) 1335 185.8 3.3e-47
NP_001120664 (OMIM: 116955,602668) cellular nuclei ( 179) 1333 185.5 3.9e-47
NP_001120668 (OMIM: 116955,602668) cellular nuclei ( 170) 1274 177.8 7.9e-45
NP_001120667 (OMIM: 116955,602668) cellular nuclei ( 171) 1262 176.2 2.4e-44
NP_001120666 (OMIM: 116955,602668) cellular nuclei ( 172) 1260 175.9 2.8e-44
>>NP_003409 (OMIM: 116955,602668) cellular nucleic acid- (177 aa)
initn: 1347 init1: 1347 opt: 1347 Z-score: 977.1 bits: 187.3 E(85289): 1.1e-47
Smith-Waterman score: 1347; 100.0% identity (100.0% similar) in 177 aa overlap (1-177:1-177)
10 20 30 40 50 60
pF1KB7 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGES
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 GHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 GHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCY
70 80 90 100 110 120
130 140 150 160 170
pF1KB7 SCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 SCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
130 140 150 160 170
>>NP_001120665 (OMIM: 116955,602668) cellular nucleic ac (178 aa)
initn: 987 init1: 812 opt: 1335 Z-score: 968.6 bits: 185.8 E(85289): 3.3e-47
Smith-Waterman score: 1335; 99.4% identity (99.4% similar) in 178 aa overlap (1-177:1-178)
10 20 30 40 50 60
pF1KB7 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGES
10 20 30 40 50 60
70 80 90 100 110
pF1KB7 GHLAKDCDLQED-ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKC
:::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKC
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB7 YSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
130 140 150 160 170
>>NP_001120664 (OMIM: 116955,602668) cellular nucleic ac (179 aa)
initn: 808 init1: 808 opt: 1333 Z-score: 967.2 bits: 185.5 E(85289): 3.9e-47
Smith-Waterman score: 1333; 98.9% identity (98.9% similar) in 179 aa overlap (1-177:1-179)
10 20 30 40 50 60
pF1KB7 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGES
10 20 30 40 50 60
70 80 90 100 110
pF1KB7 GHLAKDCDLQED--ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQK
:::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GHLAKDCDLQEDVEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQK
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB7 CYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
130 140 150 160 170
>>NP_001120668 (OMIM: 116955,602668) cellular nucleic ac (170 aa)
initn: 1065 init1: 1065 opt: 1274 Z-score: 925.8 bits: 177.8 E(85289): 7.9e-45
Smith-Waterman score: 1274; 96.0% identity (96.0% similar) in 177 aa overlap (1-177:1-170)
10 20 30 40 50 60
pF1KB7 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGES
::::::::::::::::::::::::::::::::::: ::::::::::::::::::
NP_001 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRG-------FQFVSSSLPDICYRCGES
10 20 30 40 50
70 80 90 100 110 120
pF1KB7 GHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCY
60 70 80 90 100 110
130 140 150 160 170
pF1KB7 SCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
120 130 140 150 160 170
>>NP_001120667 (OMIM: 116955,602668) cellular nucleic ac (171 aa)
initn: 1070 init1: 812 opt: 1262 Z-score: 917.3 bits: 176.2 E(85289): 2.4e-44
Smith-Waterman score: 1262; 95.5% identity (95.5% similar) in 178 aa overlap (1-177:1-171)
10 20 30 40 50 60
pF1KB7 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGES
::::::::::::::::::::::::::::::::::: ::::::::::::::::::
NP_001 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRG-------FQFVSSSLPDICYRCGES
10 20 30 40 50
70 80 90 100 110
pF1KB7 GHLAKDCDLQED-ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKC
:::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKC
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB7 YSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
120 130 140 150 160 170
>>NP_001120666 (OMIM: 116955,602668) cellular nucleic ac (172 aa)
initn: 1066 init1: 808 opt: 1260 Z-score: 915.9 bits: 175.9 E(85289): 2.8e-44
Smith-Waterman score: 1260; 95.0% identity (95.0% similar) in 179 aa overlap (1-177:1-172)
10 20 30 40 50 60
pF1KB7 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGES
::::::::::::::::::::::::::::::::::: ::::::::::::::::::
NP_001 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRG-------FQFVSSSLPDICYRCGES
10 20 30 40 50
70 80 90 100 110
pF1KB7 GHLAKDCDLQED--ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQK
:::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GHLAKDCDLQEDVEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQK
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB7 CYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
120 130 140 150 160 170
177 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 08:32:42 2016 done: Fri Nov 4 08:32:42 2016
Total Scan time: 5.510 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]