FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7540, 258 aa
  1>>>pF1KB7540 258 - 258 aa - 258 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.6231+/-0.000693; mu= 7.2276+/- 0.042
 mean_var=180.7467+/-36.869, 0's: 0 Z-trim(117.3): 157  B-trim: 1045 in 1/53
 Lambda= 0.095398
 statistics sampled from 17885 (18073) to 17885 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.845), E-opt: 0.2 (0.555), width:  16
 Scan time:  2.750

The best scores are:                                      opt bits E(32554)
CCDS7675.1 VENTX gene_id:27287|Hs108|chr10         ( 258) 1792 257.5 6.5e-69


>>CCDS7675.1 VENTX gene_id:27287|Hs108|chr10              (258 aa)
 initn: 1792 init1: 1792 opt: 1792  Z-score: 1350.6  bits: 257.5 E(32554): 6.5e-69
Smith-Waterman score: 1792; 99.6% identity (99.6% similar) in 258 aa overlap (1-258:1-258)

               10        20        30        40        50        60
pF1KB7 MRLSSSPPRGPQQLSSFGSVDWLSQSSCSGPTHTPRPADFSPGSLPGPGQTSGAREPPQA
       ::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::
CCDS76 MRLSSSPPRGPQQLSSFGSVDWLSQSSCSGPTHTPRPADFSLGSLPGPGQTSGAREPPQA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 VSIKEAAGSSNLPAPERTMAGLSKEPNTLRAPRVRTAFTMEQVRTLEGVFQHHQYLSPLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 VSIKEAAGSSNLPAPERTMAGLSKEPNTLRAPRVRTAFTMEQVRTLEGVFQHHQYLSPLE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 RKRLAREMQLSEVQIKTWFQNRRMKHKRQMQDPQLHSPFSGSLHAPPAFYSTSSGLANGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 RKRLAREMQLSEVQIKTWFQNRRMKHKRQMQDPQLHSPFSGSLHAPPAFYSTSSGLANGL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 QLLCPWAPLSGPQALMLPPGSFWGLCQVAQEALASAGASCCGQPLASHPPTPGRPSLGPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 QLLCPWAPLSGPQALMLPPGSFWGLCQVAQEALASAGASCCGQPLASHPPTPGRPSLGPA
              190       200       210       220       230       240

              250        
pF1KB7 LSTGPRGLCAMPQTGDAF
       ::::::::::::::::::
CCDS76 LSTGPRGLCAMPQTGDAF
              250        




258 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 08:33:15 2016 done: Fri Nov  4 08:33:16 2016
 Total Scan time:  2.750 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]