Result of FASTA (omim) for
pF1KB7540
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7540, 258 aa
1>>>pF1KB7540 258 - 258 aa - 258 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.4417+/-0.000281; mu= 8.5136+/- 0.018
mean_var=191.0030+/-38.586, 0's: 0 Z-trim(125.1): 228 B-trim: 2678 in 2/57
Lambda= 0.092801
statistics sampled from 47862 (48165) to 47862 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.841), E-opt: 0.2 (0.565), width: 16
Scan time: 8.390
The best scores are: opt bits E(85289)
NP_055283 (OMIM: 607158) homeobox protein VENTX [H ( 258) 1792 250.9 1.6e-66
XP_016871562 (OMIM: 607158) PREDICTED: homeobox pr ( 189) 1274 181.4 1e-45
NP_001106175 (OMIM: 604294,614402) ventral anterio ( 334) 282 48.9 1.4e-05
NP_001317252 (OMIM: 142966) homeobox protein Hox-B ( 299) 263 46.3 7.7e-05
NP_001317251 (OMIM: 142966) homeobox protein Hox-B ( 358) 263 46.4 8.7e-05
XP_011523028 (OMIM: 142966) PREDICTED: homeobox pr ( 358) 263 46.4 8.7e-05
XP_011523023 (OMIM: 142966) PREDICTED: homeobox pr ( 430) 263 46.4 9.9e-05
XP_005257334 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 263 46.4 9.9e-05
NP_002137 (OMIM: 142966) homeobox protein Hox-B3 i ( 431) 263 46.4 9.9e-05
XP_011523022 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 263 46.4 9.9e-05
XP_011523021 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 263 46.4 9.9e-05
XP_006721917 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 263 46.4 9.9e-05
XP_011523012 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 263 46.4 9.9e-05
XP_011523010 (OMIM: 142966) PREDICTED: homeobox pr ( 488) 263 46.5 0.00011
NP_036608 (OMIM: 604295) ventral anterior homeobox ( 290) 258 45.6 0.00012
XP_016880050 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 263 46.6 0.00012
XP_016880052 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 263 46.6 0.00012
XP_016880051 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 263 46.6 0.00012
XP_016880047 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 263 46.6 0.00012
XP_016880049 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 263 46.6 0.00012
XP_016880048 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 263 46.6 0.00012
XP_011523009 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 263 46.6 0.00012
XP_016880046 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 263 46.6 0.00012
NP_001129743 (OMIM: 217095,611770) homeobox protei ( 301) 255 45.2 0.00016
NP_038463 (OMIM: 601881,611038) retinal homeobox p ( 346) 254 45.1 0.0002
NP_001035091 (OMIM: 214300,600147) homeobox protei ( 139) 245 43.5 0.00024
NP_004518 (OMIM: 214300,600147) homeobox protein M ( 254) 248 44.2 0.00028
NP_004378 (OMIM: 108900,187500,217095,225250,60058 ( 324) 247 44.2 0.00036
NP_001243268 (OMIM: 602041) homeobox protein Nkx-3 ( 159) 240 42.9 0.00042
XP_006715778 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 247 44.3 0.00044
XP_005249787 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 247 44.3 0.00044
XP_005249788 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 247 44.3 0.00044
NP_109377 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 247 44.3 0.00044
XP_005249789 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 247 44.3 0.00044
NP_705895 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 247 44.3 0.00044
XP_011513645 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 247 44.3 0.00044
NP_005915 (OMIM: 600535) homeobox protein MOX-2 [H ( 304) 240 43.2 0.00066
NP_061815 (OMIM: 142992,612109) homeobox protein H ( 348) 241 43.4 0.00066
NP_002136 (OMIM: 142967) homeobox protein Hox-B2 [ ( 356) 241 43.4 0.00067
NP_006158 (OMIM: 602041) homeobox protein Nkx-3.1 ( 234) 237 42.7 0.00072
NP_005510 (OMIM: 600647) homeobox protein HMX2 [Ho ( 273) 236 42.6 0.00088
XP_005269800 (OMIM: 600647) PREDICTED: homeobox pr ( 273) 236 42.6 0.00088
NP_055436 (OMIM: 142981) homeobox protein Hox-D4 [ ( 255) 235 42.5 0.00092
NP_002720 (OMIM: 604420) hematopoietically-express ( 270) 232 42.1 0.0013
NP_064448 (OMIM: 605211) barH-like 1 homeobox prot ( 327) 233 42.3 0.0013
NP_663632 (OMIM: 616542) GS homeobox 1 [Homo sapie ( 264) 231 41.9 0.0014
XP_011509367 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 234 42.6 0.0015
XP_005246570 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 234 42.6 0.0015
XP_005246567 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 234 42.6 0.0015
XP_006712540 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 234 42.6 0.0015
>>NP_055283 (OMIM: 607158) homeobox protein VENTX [Homo (258 aa)
initn: 1792 init1: 1792 opt: 1792 Z-score: 1315.0 bits: 250.9 E(85289): 1.6e-66
Smith-Waterman score: 1792; 99.6% identity (99.6% similar) in 258 aa overlap (1-258:1-258)
10 20 30 40 50 60
pF1KB7 MRLSSSPPRGPQQLSSFGSVDWLSQSSCSGPTHTPRPADFSPGSLPGPGQTSGAREPPQA
::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::
NP_055 MRLSSSPPRGPQQLSSFGSVDWLSQSSCSGPTHTPRPADFSLGSLPGPGQTSGAREPPQA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 VSIKEAAGSSNLPAPERTMAGLSKEPNTLRAPRVRTAFTMEQVRTLEGVFQHHQYLSPLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 VSIKEAAGSSNLPAPERTMAGLSKEPNTLRAPRVRTAFTMEQVRTLEGVFQHHQYLSPLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 RKRLAREMQLSEVQIKTWFQNRRMKHKRQMQDPQLHSPFSGSLHAPPAFYSTSSGLANGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 RKRLAREMQLSEVQIKTWFQNRRMKHKRQMQDPQLHSPFSGSLHAPPAFYSTSSGLANGL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 QLLCPWAPLSGPQALMLPPGSFWGLCQVAQEALASAGASCCGQPLASHPPTPGRPSLGPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 QLLCPWAPLSGPQALMLPPGSFWGLCQVAQEALASAGASCCGQPLASHPPTPGRPSLGPA
190 200 210 220 230 240
250
pF1KB7 LSTGPRGLCAMPQTGDAF
::::::::::::::::::
NP_055 LSTGPRGLCAMPQTGDAF
250
>>XP_016871562 (OMIM: 607158) PREDICTED: homeobox protei (189 aa)
initn: 1262 init1: 1262 opt: 1274 Z-score: 941.9 bits: 181.4 E(85289): 1e-45
Smith-Waterman score: 1274; 96.3% identity (98.4% similar) in 189 aa overlap (70-258:3-189)
40 50 60 70 80 90
pF1KB7 FSPGSLPGPGQTSGAREPPQAVSIKEAAGSSNLPAPERTMAGLSKEPNTLRAPRVRTAFT
:..: : .:.:::::::::::::::::::
XP_016 MLSQMPLP--SMSGLSKEPNTLRAPRVRTAFT
10 20 30
100 110 120 130 140 150
pF1KB7 MEQVRTLEGVFQHHQYLSPLERKRLAREMQLSEVQIKTWFQNRRMKHKRQMQDPQLHSPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MEQVRTLEGVFQHHQYLSPLERKRLAREMQLSEVQIKTWFQNRRMKHKRQMQDPQLHSPF
40 50 60 70 80 90
160 170 180 190 200 210
pF1KB7 SGSLHAPPAFYSTSSGLANGLQLLCPWAPLSGPQALMLPPGSFWGLCQVAQEALASAGAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SGSLHAPPAFYSTSSGLANGLQLLCPWAPLSGPQALMLPPGSFWGLCQVAQEALASAGAS
100 110 120 130 140 150
220 230 240 250
pF1KB7 CCGQPLASHPPTPGRPSLGPALSTGPRGLCAMPQTGDAF
:::::::::::::::::::::::::::::::::::::::
XP_016 CCGQPLASHPPTPGRPSLGPALSTGPRGLCAMPQTGDAF
160 170 180
>>NP_001106175 (OMIM: 604294,614402) ventral anterior ho (334 aa)
initn: 222 init1: 196 opt: 282 Z-score: 221.1 bits: 48.9 E(85289): 1.4e-05
Smith-Waterman score: 287; 33.6% identity (55.9% similar) in 229 aa overlap (50-258:64-272)
20 30 40 50 60 70
pF1KB7 VDWLSQSSCSGPTHTPRPADFSPGSLPGPGQTSGAREPP--QAVSIKEAAGS-SNLPAPE
....: .: . . ...: :: .. :.
NP_001 GAEGNLPAAFLKEPQGAFSASGAAEDCNKSKSNSAADPDYCRRILVRDAKGSIREIILPK
40 50 60 70 80 90
80 90 100 110 120 130
pF1KB7 RTMAGLSKEPNTLRAPRVRTAFTMEQVRTLEGVFQHHQYLSPLERKRLAREMQLSEVQIK
::. . : :.::.:: ::. :: ::. ::. :: .:::...:::.:.:
NP_001 ----GLDLD----RPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQVK
100 110 120 130 140
140 150 160 170 180
pF1KB7 TWFQNRRMKHKR-QMQDPQLHSPFS--------------GSLHAPPAFYSTSSGLANGLQ
.:::::: :.:. : .: .:.: : : : .::.. . :.:
NP_001 VWFQNRRTKQKKDQGKDSELRSVVSETAATCSVLRLLEQGRLLSPPGLPALLPPCATGAL
150 160 170 180 190 200
190 200 210 220 230 240
pF1KB7 LLCPWAPLSGPQALMLPPGSFWGLCQVAQEALASAGASCCGQPLASHPPT-PGRPSLGPA
. : ::. : :. : ..: : :. : . ..: :::. : :. :::
NP_001 ----GSALRGPSLPALGAGAAAG--SAAAAAAAAPGPAGAASP---HPPAVGGAPGPGPA
210 220 230 240 250
250
pF1KB7 LSTGPRGLCA-MPQTGDAF
:: :: : : .: ..
NP_001 ---GPGGLHAGAPAAGHSLFSLPVPSLLGSVASRLSSAPLTMAGSLAGNLQELSARYLSS
260 270 280 290 300 310
>>NP_001317252 (OMIM: 142966) homeobox protein Hox-B3 is (299 aa)
initn: 209 init1: 166 opt: 263 Z-score: 207.9 bits: 46.3 E(85289): 7.7e-05
Smith-Waterman score: 263; 32.2% identity (57.5% similar) in 174 aa overlap (81-252:46-212)
60 70 80 90 100 110
pF1KB7 TSGAREPPQAVSIKEAAGSSNLPAPERTMAGLSKEPNTLRAPRVRTAFTMEQVRTLEGVF
: .. :.. . :.:::.: :. :: :
NP_001 GTAEGCGGGGGGGGGGGSGGSGGGGGGGGGGDKSPPGSAASKRARTAYTSAQLVELEKEF
20 30 40 50 60 70
120 130 140 150 160
pF1KB7 QHHQYLSPLERKRLAREMQLSEVQIKTWFQNRRMKHKRQMQDPQLHSPFSGSLHA--PPA
. ..:: .: ..: ..::: ::: ::::::::.:.... : : .: : ::
NP_001 HFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQKAKGLASSSGGPSPAGSPPQ
80 90 100 110 120 130
170 180 190 200 210 220
pF1KB7 FYSTSSGLANGLQLLCPWAPLSGPQALMLPPGSFWGLCQVAQEALASAGASCCGQPLASH
.....:. :.:. . : .: :. . ..: . : : . :: : ..
NP_001 PMQSTAGFMNALHSMTPSYESPSPPAFGKAHQNAYALPSNYQPPLKG-----CGAP-QKY
140 150 160 170 180
230 240 250
pF1KB7 PPTPGRPSLGPALSTGPRGLCAMPQTGDAF
::::. : : . . : . :
NP_001 PPTPA-PEYEPHVLQANGGAYGTPTMQGSPVYVGGGGYADPLPPPAGPSLYGLNHLSHHP
190 200 210 220 230 240
>>NP_001317251 (OMIM: 142966) homeobox protein Hox-B3 is (358 aa)
initn: 236 init1: 166 opt: 263 Z-score: 206.9 bits: 46.4 E(85289): 8.7e-05
Smith-Waterman score: 282; 28.5% identity (54.5% similar) in 253 aa overlap (5-252:39-271)
10 20 30
pF1KB7 MRLSSSPPR-GPQQLSSFGS--VDWLSQSSCSGP
:.::. :: :.. . :...:
NP_001 PLSAPPGSPPPSAAPTSATSNSSNGGGPSKSGPPKCGPGTNSTLTKQIFPWMKESR----
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB7 THTPRPADFSPGSLPGPGQTSGAREPPQAVSIKEAAGSSNLPAPERTMAGLSKEPNTLRA
.: . . :::. : : .:. . . ..:... .: .. :.. .
NP_001 -QTSKLKNNSPGTAEGCGGGGGGGGGGGSGGSGGGGGGGG--------GGDKSPPGSAAS
70 80 90 100 110
100 110 120 130 140 150
pF1KB7 PRVRTAFTMEQVRTLEGVFQHHQYLSPLERKRLAREMQLSEVQIKTWFQNRRMKHKRQMQ
:.:::.: :. :: :. ..:: .: ..: ..::: ::: ::::::::.:....
NP_001 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQK
120 130 140 150 160 170
160 170 180 190 200
pF1KB7 DPQLHSPFSGSLHA--PPAFYSTSSGLANGLQLLCPWAPLSGPQALMLPPGSFWGLCQVA
: : .: : :: .....:. :.:. . : .: :. . ..: .
NP_001 AKGLASSSGGPSPAGSPPQPMQSTAGFMNALHSMTPSYESPSPPAFGKAHQNAYALPSNY
180 190 200 210 220 230
210 220 230 240 250
pF1KB7 QEALASAGASCCGQPLASHPPTPGRPSLGPALSTGPRGLCAMPQTGDAF
: : . :: : ..::::. : : . . : . :
NP_001 QPPLKG-----CGAP-QKYPPTPA-PEYEPHVLQANGGAYGTPTMQGSPVYVGGGGYADP
240 250 260 270 280
NP_001 LPPPAGPSLYGLNHLSHHPSGNLDYNGAPPMAPSQHHGPCEPHPTYTDLSSHHAPPPQGR
290 300 310 320 330 340
>>XP_011523028 (OMIM: 142966) PREDICTED: homeobox protei (358 aa)
initn: 236 init1: 166 opt: 263 Z-score: 206.9 bits: 46.4 E(85289): 8.7e-05
Smith-Waterman score: 282; 28.5% identity (54.5% similar) in 253 aa overlap (5-252:39-271)
10 20 30
pF1KB7 MRLSSSPPR-GPQQLSSFGS--VDWLSQSSCSGP
:.::. :: :.. . :...:
XP_011 PLSAPPGSPPPSAAPTSATSNSSNGGGPSKSGPPKCGPGTNSTLTKQIFPWMKESR----
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB7 THTPRPADFSPGSLPGPGQTSGAREPPQAVSIKEAAGSSNLPAPERTMAGLSKEPNTLRA
.: . . :::. : : .:. . . ..:... .: .. :.. .
XP_011 -QTSKLKNNSPGTAEGCGGGGGGGGGGGSGGSGGGGGGGG--------GGDKSPPGSAAS
70 80 90 100 110
100 110 120 130 140 150
pF1KB7 PRVRTAFTMEQVRTLEGVFQHHQYLSPLERKRLAREMQLSEVQIKTWFQNRRMKHKRQMQ
:.:::.: :. :: :. ..:: .: ..: ..::: ::: ::::::::.:....
XP_011 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQK
120 130 140 150 160 170
160 170 180 190 200
pF1KB7 DPQLHSPFSGSLHA--PPAFYSTSSGLANGLQLLCPWAPLSGPQALMLPPGSFWGLCQVA
: : .: : :: .....:. :.:. . : .: :. . ..: .
XP_011 AKGLASSSGGPSPAGSPPQPMQSTAGFMNALHSMTPSYESPSPPAFGKAHQNAYALPSNY
180 190 200 210 220 230
210 220 230 240 250
pF1KB7 QEALASAGASCCGQPLASHPPTPGRPSLGPALSTGPRGLCAMPQTGDAF
: : . :: : ..::::. : : . . : . :
XP_011 QPPLKG-----CGAP-QKYPPTPA-PEYEPHVLQANGGAYGTPTMQGSPVYVGGGGYADP
240 250 260 270 280
XP_011 LPPPAGPSLYGLNHLSHHPSGNLDYNGAPPMAPSQHHGPCEPHPTYTDLSSHHAPPPQGR
290 300 310 320 330 340
>>XP_011523023 (OMIM: 142966) PREDICTED: homeobox protei (430 aa)
initn: 236 init1: 166 opt: 263 Z-score: 205.9 bits: 46.4 E(85289): 9.9e-05
Smith-Waterman score: 274; 28.5% identity (54.2% similar) in 253 aa overlap (5-252:112-343)
10 20 30
pF1KB7 MRLSSSPPR-GPQQLSSFGS--VDWLSQSSCSGP
:.::. :: :.. . :...:
XP_011 PLSAPPGSPPPSAAPTSATSNSSNGGGPSKSGPPKCGPGTNSTLTKQIFPWMKESR----
90 100 110 120 130
40 50 60 70 80 90
pF1KB7 THTPRPADFSPGSLPGPGQTSGAREPPQAVSIKEAAGSSNLPAPERTMAGLSKEPNTLRA
.: . . :::. : .:. .. : ..:... : .. :.. .
XP_011 -QTSKLKNNSPGTEGCGGGGGGGGGGGSGGSGGGGGGGGG---------GDKSPPGSAAS
140 150 160 170 180
100 110 120 130 140 150
pF1KB7 PRVRTAFTMEQVRTLEGVFQHHQYLSPLERKRLAREMQLSEVQIKTWFQNRRMKHKRQMQ
:.:::.: :. :: :. ..:: .: ..: ..::: ::: ::::::::.:....
XP_011 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQK
190 200 210 220 230 240
160 170 180 190 200
pF1KB7 DPQLHSPFSGSLHA--PPAFYSTSSGLANGLQLLCPWAPLSGPQALMLPPGSFWGLCQVA
: : .: : :: .....:. :.:. . : .: :. . ..: .
XP_011 AKGLASSSGGPSPAGSPPQPMQSTAGFMNALHSMTPSYESPSPPAFGKAHQNAYALPSNY
250 260 270 280 290 300
210 220 230 240 250
pF1KB7 QEALASAGASCCGQPLASHPPTPGRPSLGPALSTGPRGLCAMPQTGDAF
: : . :: : ..::::. : : . . : . :
XP_011 QPPLKG-----CGAP-QKYPPTPA-PEYEPHVLQANGGAYGTPTMQGSPVYVGGGGYADP
310 320 330 340 350 360
XP_011 LPPPAGPSLYGLNHLSHHPSGNLDYNGAPPMAPSQHHGPCEPHPTYTDLSSHHAPPPQGR
370 380 390 400 410 420
>>XP_005257334 (OMIM: 142966) PREDICTED: homeobox protei (431 aa)
initn: 236 init1: 166 opt: 263 Z-score: 205.9 bits: 46.4 E(85289): 9.9e-05
Smith-Waterman score: 282; 28.5% identity (54.5% similar) in 253 aa overlap (5-252:112-344)
10 20 30
pF1KB7 MRLSSSPPR-GPQQLSSFGS--VDWLSQSSCSGP
:.::. :: :.. . :...:
XP_005 PLSAPPGSPPPSAAPTSATSNSSNGGGPSKSGPPKCGPGTNSTLTKQIFPWMKESR----
90 100 110 120 130
40 50 60 70 80 90
pF1KB7 THTPRPADFSPGSLPGPGQTSGAREPPQAVSIKEAAGSSNLPAPERTMAGLSKEPNTLRA
.: . . :::. : : .:. . . ..:... .: .. :.. .
XP_005 -QTSKLKNNSPGTAEGCGGGGGGGGGGGSGGSGGGGGGGG--------GGDKSPPGSAAS
140 150 160 170 180
100 110 120 130 140 150
pF1KB7 PRVRTAFTMEQVRTLEGVFQHHQYLSPLERKRLAREMQLSEVQIKTWFQNRRMKHKRQMQ
:.:::.: :. :: :. ..:: .: ..: ..::: ::: ::::::::.:....
XP_005 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQK
190 200 210 220 230 240
160 170 180 190 200
pF1KB7 DPQLHSPFSGSLHA--PPAFYSTSSGLANGLQLLCPWAPLSGPQALMLPPGSFWGLCQVA
: : .: : :: .....:. :.:. . : .: :. . ..: .
XP_005 AKGLASSSGGPSPAGSPPQPMQSTAGFMNALHSMTPSYESPSPPAFGKAHQNAYALPSNY
250 260 270 280 290 300
210 220 230 240 250
pF1KB7 QEALASAGASCCGQPLASHPPTPGRPSLGPALSTGPRGLCAMPQTGDAF
: : . :: : ..::::. : : . . : . :
XP_005 QPPLKG-----CGAP-QKYPPTPA-PEYEPHVLQANGGAYGTPTMQGSPVYVGGGGYADP
310 320 330 340 350 360
XP_005 LPPPAGPSLYGLNHLSHHPSGNLDYNGAPPMAPSQHHGPCEPHPTYTDLSSHHAPPPQGR
370 380 390 400 410 420
>>NP_002137 (OMIM: 142966) homeobox protein Hox-B3 isofo (431 aa)
initn: 236 init1: 166 opt: 263 Z-score: 205.9 bits: 46.4 E(85289): 9.9e-05
Smith-Waterman score: 282; 28.5% identity (54.5% similar) in 253 aa overlap (5-252:112-344)
10 20 30
pF1KB7 MRLSSSPPR-GPQQLSSFGS--VDWLSQSSCSGP
:.::. :: :.. . :...:
NP_002 PLSAPPGSPPPSAAPTSATSNSSNGGGPSKSGPPKCGPGTNSTLTKQIFPWMKESR----
90 100 110 120 130
40 50 60 70 80 90
pF1KB7 THTPRPADFSPGSLPGPGQTSGAREPPQAVSIKEAAGSSNLPAPERTMAGLSKEPNTLRA
.: . . :::. : : .:. . . ..:... .: .. :.. .
NP_002 -QTSKLKNNSPGTAEGCGGGGGGGGGGGSGGSGGGGGGGG--------GGDKSPPGSAAS
140 150 160 170 180
100 110 120 130 140 150
pF1KB7 PRVRTAFTMEQVRTLEGVFQHHQYLSPLERKRLAREMQLSEVQIKTWFQNRRMKHKRQMQ
:.:::.: :. :: :. ..:: .: ..: ..::: ::: ::::::::.:....
NP_002 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQK
190 200 210 220 230 240
160 170 180 190 200
pF1KB7 DPQLHSPFSGSLHA--PPAFYSTSSGLANGLQLLCPWAPLSGPQALMLPPGSFWGLCQVA
: : .: : :: .....:. :.:. . : .: :. . ..: .
NP_002 AKGLASSSGGPSPAGSPPQPMQSTAGFMNALHSMTPSYESPSPPAFGKAHQNAYALPSNY
250 260 270 280 290 300
210 220 230 240 250
pF1KB7 QEALASAGASCCGQPLASHPPTPGRPSLGPALSTGPRGLCAMPQTGDAF
: : . :: : ..::::. : : . . : . :
NP_002 QPPLKG-----CGAP-QKYPPTPA-PEYEPHVLQANGGAYGTPTMQGSPVYVGGGGYADP
310 320 330 340 350 360
NP_002 LPPPAGPSLYGLNHLSHHPSGNLDYNGAPPMAPSQHHGPCEPHPTYTDLSSHHAPPPQGR
370 380 390 400 410 420
>>XP_011523022 (OMIM: 142966) PREDICTED: homeobox protei (431 aa)
initn: 236 init1: 166 opt: 263 Z-score: 205.9 bits: 46.4 E(85289): 9.9e-05
Smith-Waterman score: 282; 28.5% identity (54.5% similar) in 253 aa overlap (5-252:112-344)
10 20 30
pF1KB7 MRLSSSPPR-GPQQLSSFGS--VDWLSQSSCSGP
:.::. :: :.. . :...:
XP_011 PLSAPPGSPPPSAAPTSATSNSSNGGGPSKSGPPKCGPGTNSTLTKQIFPWMKESR----
90 100 110 120 130
40 50 60 70 80 90
pF1KB7 THTPRPADFSPGSLPGPGQTSGAREPPQAVSIKEAAGSSNLPAPERTMAGLSKEPNTLRA
.: . . :::. : : .:. . . ..:... .: .. :.. .
XP_011 -QTSKLKNNSPGTAEGCGGGGGGGGGGGSGGSGGGGGGGG--------GGDKSPPGSAAS
140 150 160 170 180
100 110 120 130 140 150
pF1KB7 PRVRTAFTMEQVRTLEGVFQHHQYLSPLERKRLAREMQLSEVQIKTWFQNRRMKHKRQMQ
:.:::.: :. :: :. ..:: .: ..: ..::: ::: ::::::::.:....
XP_011 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQK
190 200 210 220 230 240
160 170 180 190 200
pF1KB7 DPQLHSPFSGSLHA--PPAFYSTSSGLANGLQLLCPWAPLSGPQALMLPPGSFWGLCQVA
: : .: : :: .....:. :.:. . : .: :. . ..: .
XP_011 AKGLASSSGGPSPAGSPPQPMQSTAGFMNALHSMTPSYESPSPPAFGKAHQNAYALPSNY
250 260 270 280 290 300
210 220 230 240 250
pF1KB7 QEALASAGASCCGQPLASHPPTPGRPSLGPALSTGPRGLCAMPQTGDAF
: : . :: : ..::::. : : . . : . :
XP_011 QPPLKG-----CGAP-QKYPPTPA-PEYEPHVLQANGGAYGTPTMQGSPVYVGGGGYADP
310 320 330 340 350 360
XP_011 LPPPAGPSLYGLNHLSHHPSGNLDYNGAPPMAPSQHHGPCEPHPTYTDLSSHHAPPPQGR
370 380 390 400 410 420
258 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 08:33:16 2016 done: Fri Nov 4 08:33:17 2016
Total Scan time: 8.390 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]