FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7542, 258 aa
  1>>>pF1KB7542 258 - 258 aa - 258 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8758+/-0.000947; mu= 11.8503+/- 0.057
 mean_var=70.4909+/-14.018, 0's: 0 Z-trim(105.1): 24  B-trim: 0 in 0/50
 Lambda= 0.152759
 statistics sampled from 8229 (8235) to 8229 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.635), E-opt: 0.2 (0.253), width:  16
 Scan time:  2.300

The best scores are:                                      opt bits E(32554)
CCDS11541.1 SNF8 gene_id:11267|Hs108|chr17         ( 258) 1684 380.2 7.9e-106
CCDS82156.1 SNF8 gene_id:11267|Hs108|chr17         ( 257) 1666 376.2 1.2e-104


>>CCDS11541.1 SNF8 gene_id:11267|Hs108|chr17              (258 aa)
 initn: 1684 init1: 1684 opt: 1684  Z-score: 2013.5  bits: 380.2 E(32554): 7.9e-106
Smith-Waterman score: 1684; 100.0% identity (100.0% similar) in 258 aa overlap (1-258:1-258)

               10        20        30        40        50        60
pF1KB7 MHRRGVGAGAIAKKKLAEAKYKERGTVLAEDQLAQMSKQLDMFKTNLEEFASKHKQEIRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MHRRGVGAGAIAKKKLAEAKYKERGTVLAEDQLAQMSKQLDMFKTNLEEFASKHKQEIRK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 NPEFRVQFQDMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQIIEVCLALKHRNGGLIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 NPEFRVQFQDMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQIIEVCLALKHRNGGLIT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 LEELHQQVLKGRGKFAQDVSQDDLIRAIKKLKALGTGFGIIPVGGTYLIQSVPAELNMDH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LEELHQQVLKGRGKFAQDVSQDDLIRAIKKLKALGTGFGIIPVGGTYLIQSVPAELNMDH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 TVVLQLAEKNGYVTVSEIKASLKWETERARQVLEHLLKEGLAWLDLQAPGEAHYWLPALF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 TVVLQLAEKNGYVTVSEIKASLKWETERARQVLEHLLKEGLAWLDLQAPGEAHYWLPALF
              190       200       210       220       230       240

              250        
pF1KB7 TDLYSQEITAEEAREALP
       ::::::::::::::::::
CCDS11 TDLYSQEITAEEAREALP
              250        

>>CCDS82156.1 SNF8 gene_id:11267|Hs108|chr17              (257 aa)
 initn: 1224 init1: 1224 opt: 1666  Z-score: 1992.1  bits: 376.2 E(32554): 1.2e-104
Smith-Waterman score: 1666; 99.6% identity (99.6% similar) in 258 aa overlap (1-258:1-257)

               10        20        30        40        50        60
pF1KB7 MHRRGVGAGAIAKKKLAEAKYKERGTVLAEDQLAQMSKQLDMFKTNLEEFASKHKQEIRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MHRRGVGAGAIAKKKLAEAKYKERGTVLAEDQLAQMSKQLDMFKTNLEEFASKHKQEIRK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 NPEFRVQFQDMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQIIEVCLALKHRNGGLIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 NPEFRVQFQDMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQIIEVCLALKHRNGGLIT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 LEELHQQVLKGRGKFAQDVSQDDLIRAIKKLKALGTGFGIIPVGGTYLIQSVPAELNMDH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 LEELHQQVLKGRGKFAQDVSQDDLIRAIKKLKALGTGFGIIPVGGTYLIQSVPAELNMDH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 TVVLQLAEKNGYVTVSEIKASLKWETERARQVLEHLLKEGLAWLDLQAPGEAHYWLPALF
       :::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 TVVLQLAE-NGYVTVSEIKASLKWETERARQVLEHLLKEGLAWLDLQAPGEAHYWLPALF
               190       200       210       220       230         

              250        
pF1KB7 TDLYSQEITAEEAREALP
       ::::::::::::::::::
CCDS82 TDLYSQEITAEEAREALP
     240       250       




258 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 08:34:59 2016 done: Fri Nov  4 08:34:59 2016
 Total Scan time:  2.300 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]