FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7542, 258 aa
  1>>>pF1KB7542 258 - 258 aa - 258 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6873+/-0.0004; mu= 13.1963+/- 0.025
 mean_var=76.7341+/-15.273, 0's: 0 Z-trim(112.2): 37  B-trim: 0 in 0/50
 Lambda= 0.146413
 statistics sampled from 21029 (21041) to 21029 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.621), E-opt: 0.2 (0.247), width:  16
 Scan time:  6.660

The best scores are:                                      opt bits E(85289)
NP_009172 (OMIM: 610904) vacuolar-sorting protein  ( 258) 1684 365.1 6.9e-101
NP_001304121 (OMIM: 610904) vacuolar-sorting prote ( 257) 1666 361.3 9.6e-100
NP_001304122 (OMIM: 610904) vacuolar-sorting prote ( 241) 1487 323.5 2.2e-88
XP_016879564 (OMIM: 610904) PREDICTED: vacuolar-so ( 154)  914 202.4 4.1e-52
NP_001304123 (OMIM: 610904) vacuolar-sorting prote ( 154)  914 202.4 4.1e-52


>>NP_009172 (OMIM: 610904) vacuolar-sorting protein SNF8  (258 aa)
 initn: 1684 init1: 1684 opt: 1684  Z-score: 1932.2  bits: 365.1 E(85289): 6.9e-101
Smith-Waterman score: 1684; 100.0% identity (100.0% similar) in 258 aa overlap (1-258:1-258)

               10        20        30        40        50        60
pF1KB7 MHRRGVGAGAIAKKKLAEAKYKERGTVLAEDQLAQMSKQLDMFKTNLEEFASKHKQEIRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 MHRRGVGAGAIAKKKLAEAKYKERGTVLAEDQLAQMSKQLDMFKTNLEEFASKHKQEIRK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 NPEFRVQFQDMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQIIEVCLALKHRNGGLIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 NPEFRVQFQDMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQIIEVCLALKHRNGGLIT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 LEELHQQVLKGRGKFAQDVSQDDLIRAIKKLKALGTGFGIIPVGGTYLIQSVPAELNMDH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 LEELHQQVLKGRGKFAQDVSQDDLIRAIKKLKALGTGFGIIPVGGTYLIQSVPAELNMDH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 TVVLQLAEKNGYVTVSEIKASLKWETERARQVLEHLLKEGLAWLDLQAPGEAHYWLPALF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 TVVLQLAEKNGYVTVSEIKASLKWETERARQVLEHLLKEGLAWLDLQAPGEAHYWLPALF
              190       200       210       220       230       240

              250        
pF1KB7 TDLYSQEITAEEAREALP
       ::::::::::::::::::
NP_009 TDLYSQEITAEEAREALP
              250        

>>NP_001304121 (OMIM: 610904) vacuolar-sorting protein S  (257 aa)
 initn: 1224 init1: 1224 opt: 1666  Z-score: 1911.7  bits: 361.3 E(85289): 9.6e-100
Smith-Waterman score: 1666; 99.6% identity (99.6% similar) in 258 aa overlap (1-258:1-257)

               10        20        30        40        50        60
pF1KB7 MHRRGVGAGAIAKKKLAEAKYKERGTVLAEDQLAQMSKQLDMFKTNLEEFASKHKQEIRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MHRRGVGAGAIAKKKLAEAKYKERGTVLAEDQLAQMSKQLDMFKTNLEEFASKHKQEIRK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 NPEFRVQFQDMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQIIEVCLALKHRNGGLIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NPEFRVQFQDMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQIIEVCLALKHRNGGLIT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 LEELHQQVLKGRGKFAQDVSQDDLIRAIKKLKALGTGFGIIPVGGTYLIQSVPAELNMDH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LEELHQQVLKGRGKFAQDVSQDDLIRAIKKLKALGTGFGIIPVGGTYLIQSVPAELNMDH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 TVVLQLAEKNGYVTVSEIKASLKWETERARQVLEHLLKEGLAWLDLQAPGEAHYWLPALF
       :::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TVVLQLAE-NGYVTVSEIKASLKWETERARQVLEHLLKEGLAWLDLQAPGEAHYWLPALF
               190       200       210       220       230         

              250        
pF1KB7 TDLYSQEITAEEAREALP
       ::::::::::::::::::
NP_001 TDLYSQEITAEEAREALP
     240       250       

>>NP_001304122 (OMIM: 610904) vacuolar-sorting protein S  (241 aa)
 initn: 1487 init1: 1487 opt: 1487  Z-score: 1707.8  bits: 323.5 E(85289): 2.2e-88
Smith-Waterman score: 1536; 93.4% identity (93.4% similar) in 258 aa overlap (1-258:1-241)

               10        20        30        40        50        60
pF1KB7 MHRRGVGAGAIAKKKLAEAKYKERGTVLAEDQLAQMSKQLDMFKTNLEEFASKHKQEIRK
       ::::::::::::::::::                 :::::::::::::::::::::::::
NP_001 MHRRGVGAGAIAKKKLAE-----------------MSKQLDMFKTNLEEFASKHKQEIRK
               10                         20        30        40   

               70        80        90       100       110       120
pF1KB7 NPEFRVQFQDMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQIIEVCLALKHRNGGLIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NPEFRVQFQDMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQIIEVCLALKHRNGGLIT
            50        60        70        80        90       100   

              130       140       150       160       170       180
pF1KB7 LEELHQQVLKGRGKFAQDVSQDDLIRAIKKLKALGTGFGIIPVGGTYLIQSVPAELNMDH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LEELHQQVLKGRGKFAQDVSQDDLIRAIKKLKALGTGFGIIPVGGTYLIQSVPAELNMDH
           110       120       130       140       150       160   

              190       200       210       220       230       240
pF1KB7 TVVLQLAEKNGYVTVSEIKASLKWETERARQVLEHLLKEGLAWLDLQAPGEAHYWLPALF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TVVLQLAEKNGYVTVSEIKASLKWETERARQVLEHLLKEGLAWLDLQAPGEAHYWLPALF
           170       180       190       200       210       220   

              250        
pF1KB7 TDLYSQEITAEEAREALP
       ::::::::::::::::::
NP_001 TDLYSQEITAEEAREALP
           230       240 

>>XP_016879564 (OMIM: 610904) PREDICTED: vacuolar-sortin  (154 aa)
 initn: 914 init1: 914 opt: 914  Z-score: 1056.5  bits: 202.4 E(85289): 4.1e-52
Smith-Waterman score: 914; 100.0% identity (100.0% similar) in 142 aa overlap (117-258:13-154)

         90       100       110       120       130       140      
pF1KB7 WSEMLGVGDFYYELGVQIIEVCLALKHRNGGLITLEELHQQVLKGRGKFAQDVSQDDLIR
                                     ::::::::::::::::::::::::::::::
XP_016                   MQLNPWQVSMAKGLITLEELHQQVLKGRGKFAQDVSQDDLIR
                                 10        20        30        40  

        150       160       170       180       190       200      
pF1KB7 AIKKLKALGTGFGIIPVGGTYLIQSVPAELNMDHTVVLQLAEKNGYVTVSEIKASLKWET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AIKKLKALGTGFGIIPVGGTYLIQSVPAELNMDHTVVLQLAEKNGYVTVSEIKASLKWET
             50        60        70        80        90       100  

        210       220       230       240       250        
pF1KB7 ERARQVLEHLLKEGLAWLDLQAPGEAHYWLPALFTDLYSQEITAEEAREALP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ERARQVLEHLLKEGLAWLDLQAPGEAHYWLPALFTDLYSQEITAEEAREALP
            110       120       130       140       150    

>>NP_001304123 (OMIM: 610904) vacuolar-sorting protein S  (154 aa)
 initn: 914 init1: 914 opt: 914  Z-score: 1056.5  bits: 202.4 E(85289): 4.1e-52
Smith-Waterman score: 914; 100.0% identity (100.0% similar) in 142 aa overlap (117-258:13-154)

         90       100       110       120       130       140      
pF1KB7 WSEMLGVGDFYYELGVQIIEVCLALKHRNGGLITLEELHQQVLKGRGKFAQDVSQDDLIR
                                     ::::::::::::::::::::::::::::::
NP_001                   MQLNPWQVSMAKGLITLEELHQQVLKGRGKFAQDVSQDDLIR
                                 10        20        30        40  

        150       160       170       180       190       200      
pF1KB7 AIKKLKALGTGFGIIPVGGTYLIQSVPAELNMDHTVVLQLAEKNGYVTVSEIKASLKWET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AIKKLKALGTGFGIIPVGGTYLIQSVPAELNMDHTVVLQLAEKNGYVTVSEIKASLKWET
             50        60        70        80        90       100  

        210       220       230       240       250        
pF1KB7 ERARQVLEHLLKEGLAWLDLQAPGEAHYWLPALFTDLYSQEITAEEAREALP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ERARQVLEHLLKEGLAWLDLQAPGEAHYWLPALFTDLYSQEITAEEAREALP
            110       120       130       140       150    




258 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 08:34:59 2016 done: Fri Nov  4 08:35:00 2016
 Total Scan time:  6.660 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]