FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7543, 182 aa
  1>>>pF1KB7543 182 - 182 aa - 182 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0094+/-0.000728; mu= 9.6730+/- 0.044
 mean_var=77.0789+/-15.129, 0's: 0 Z-trim(109.6): 9  B-trim: 13 in 1/52
 Lambda= 0.146085
 statistics sampled from 10981 (10985) to 10981 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.712), E-opt: 0.2 (0.337), width:  16
 Scan time:  1.880

The best scores are:                                      opt bits E(32554)
CCDS10827.1 CBFB gene_id:865|Hs108|chr16           ( 182) 1240 270.1 5.2e-73
CCDS45508.1 CBFB gene_id:865|Hs108|chr16           ( 187) 1150 251.2 2.7e-67


>>CCDS10827.1 CBFB gene_id:865|Hs108|chr16                (182 aa)
 initn: 1240 init1: 1240 opt: 1240  Z-score: 1424.2  bits: 270.1 E(32554): 5.2e-73
Smith-Waterman score: 1240; 100.0% identity (100.0% similar) in 182 aa overlap (1-182:1-182)

               10        20        30        40        50        60
pF1KB7 MPRVVPDQRSKFENEEFFRKLSRECEIKYTGFRDRPHEERQARFQNACRDGRSEIAFVAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MPRVVPDQRSKFENEEFFRKLSRECEIKYTGFRDRPHEERQARFQNACRDGRSEIAFVAT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 GTNLSLQFFPASWQGEQRQTPSREYVDLEREAGKVYLKAPMILNGVCVIWKGWIDLQRLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GTNLSLQFFPASWQGEQRQTPSREYVDLEREAGKVYLKAPMILNGVCVIWKGWIDLQRLD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 GMGCLEFDEERAQQEDALAQQAFEEARRRTREFEDRDRSHREEMEVRVSQLLAVTGKKTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GMGCLEFDEERAQQEDALAQQAFEEARRRTREFEDRDRSHREEMEVRVSQLLAVTGKKTT
              130       140       150       160       170       180

         
pF1KB7 RP
       ::
CCDS10 RP
         

>>CCDS45508.1 CBFB gene_id:865|Hs108|chr16                (187 aa)
 initn: 1175 init1: 1150 opt: 1150  Z-score: 1321.5  bits: 251.2 E(32554): 2.7e-67
Smith-Waterman score: 1150; 98.2% identity (99.4% similar) in 170 aa overlap (1-170:1-170)

               10        20        30        40        50        60
pF1KB7 MPRVVPDQRSKFENEEFFRKLSRECEIKYTGFRDRPHEERQARFQNACRDGRSEIAFVAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MPRVVPDQRSKFENEEFFRKLSRECEIKYTGFRDRPHEERQARFQNACRDGRSEIAFVAT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 GTNLSLQFFPASWQGEQRQTPSREYVDLEREAGKVYLKAPMILNGVCVIWKGWIDLQRLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 GTNLSLQFFPASWQGEQRQTPSREYVDLEREAGKVYLKAPMILNGVCVIWKGWIDLQRLD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 GMGCLEFDEERAQQEDALAQQAFEEARRRTREFEDRDRSHREEMEVRVSQLLAVTGKKTT
       :::::::::::::::::::::::::::::::::::::::::::::.: .:          
CCDS45 GMGCLEFDEERAQQEDALAQQAFEEARRRTREFEDRDRSHREEMEARRQQDPSPGSNLGG
              130       140       150       160       170       180

              
pF1KB7 RP     
              
CCDS45 GDDLKLR
              




182 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 08:35:30 2016 done: Fri Nov  4 08:35:31 2016
 Total Scan time:  1.880 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]