FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7545, 184 aa
  1>>>pF1KB7545 184 - 184 aa - 184 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.5701+/-0.000757; mu= 6.4294+/- 0.047
 mean_var=217.8057+/-45.005, 0's: 0 Z-trim(116.6): 125  B-trim: 941 in 1/52
 Lambda= 0.086904
 statistics sampled from 17097 (17251) to 17097 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.826), E-opt: 0.2 (0.53), width:  16
 Scan time:  2.050

The best scores are:                                      opt bits E(32554)
CCDS14593.1 RHOXF1 gene_id:158800|Hs108|chrX       ( 184) 1279 171.4 2.8e-43


>>CCDS14593.1 RHOXF1 gene_id:158800|Hs108|chrX            (184 aa)
 initn: 1279 init1: 1279 opt: 1279  Z-score: 890.5  bits: 171.4 E(32554): 2.8e-43
Smith-Waterman score: 1279; 100.0% identity (100.0% similar) in 184 aa overlap (1-184:1-184)

               10        20        30        40        50        60
pF1KB7 MARSLVHDTVFYCLSVYQVKISPTPQLGAASSAEGHVGQGAPGLMGNMNPEGGVNHENGM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MARSLVHDTVFYCLSVYQVKISPTPQLGAASSAEGHVGQGAPGLMGNMNPEGGVNHENGM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 NRDGGMIPEGGGGNQEPRQQPQPPPEEPAQAAMEGPQPENMQPRTRRTKFTLLQVEELES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 NRDGGMIPEGGGGNQEPRQQPQPPPEEPAQAAMEGPQPENMQPRTRRTKFTLLQVEELES
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 VFRHTQYPDVPTRRELAENLGVTEDKVRVWFKNKRARCRRHQRELMLANELRADPDDCVY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 VFRHTQYPDVPTRRELAENLGVTEDKVRVWFKNKRARCRRHQRELMLANELRADPDDCVY
              130       140       150       160       170       180

           
pF1KB7 IVVD
       ::::
CCDS14 IVVD
           




184 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 08:36:44 2016 done: Fri Nov  4 08:36:44 2016
 Total Scan time:  2.050 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]