FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7546, 264 aa
  1>>>pF1KB7546 264 - 264 aa - 264 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.4348+/-0.000767; mu= 2.8085+/- 0.046
 mean_var=220.3210+/-46.911, 0's: 0 Z-trim(117.0): 860  B-trim: 438 in 1/55
 Lambda= 0.086406
 statistics sampled from 16702 (17686) to 16702 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.837), E-opt: 0.2 (0.543), width:  16
 Scan time:  2.930

The best scores are:                                      opt bits E(32554)
CCDS13423.1 SNAI1 gene_id:6615|Hs108|chr20         ( 264) 1843 241.3 5.1e-64
CCDS6146.1 SNAI2 gene_id:6591|Hs108|chr8           ( 268)  903 124.2 9.7e-29
CCDS32505.1 SNAI3 gene_id:333929|Hs108|chr16       ( 292)  687 97.3 1.3e-20
CCDS13006.1 SCRT2 gene_id:85508|Hs108|chr20        ( 307)  519 76.3 2.7e-14
CCDS6421.1 SCRT1 gene_id:83482|Hs108|chr8          ( 348)  512 75.5 5.5e-14


>>CCDS13423.1 SNAI1 gene_id:6615|Hs108|chr20              (264 aa)
 initn: 1843 init1: 1843 opt: 1843  Z-score: 1262.8  bits: 241.3 E(32554): 5.1e-64
Smith-Waterman score: 1843; 100.0% identity (100.0% similar) in 264 aa overlap (1-264:1-264)

               10        20        30        40        50        60
pF1KB7 MPRSFLVRKPSDPNRKPNYSELQDSNPEFTFQQPYDQAHLLAAIPPPEILNPTASLPMLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MPRSFLVRKPSDPNRKPNYSELQDSNPEFTFQQPYDQAHLLAAIPPPEILNPTASLPMLI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 WDSVLAPQAQPIAWASLRLQESPRVAELTSLSDEDSGKGSQPPSPPSPAPSSFSSTSVSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 WDSVLAPQAQPIAWASLRLQESPRVAELTSLSDEDSGKGSQPPSPPSPAPSSFSSTSVSS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 LEAEAYAAFPGLGQVPKQLAQLSEAKDLQARKAFNCKYCNKEYLSLGALKMHIRSHTLPC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LEAEAYAAFPGLGQVPKQLAQLSEAKDLQARKAFNCKYCNKEYLSLGALKMHIRSHTLPC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 VCGTCGKAFSRPWLLQGHVRTHTGEKPFSCPHCSRAFADRSNLRAHLQTHSDVKKYQCQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VCGTCGKAFSRPWLLQGHVRTHTGEKPFSCPHCSRAFADRSNLRAHLQTHSDVKKYQCQA
              190       200       210       220       230       240

              250       260    
pF1KB7 CARTFSRMSLLHKHQESGCSGCPR
       ::::::::::::::::::::::::
CCDS13 CARTFSRMSLLHKHQESGCSGCPR
              250       260    

>>CCDS6146.1 SNAI2 gene_id:6591|Hs108|chr8                (268 aa)
 initn: 921 init1: 745 opt: 903  Z-score: 629.5  bits: 124.2 E(32554): 9.7e-29
Smith-Waterman score: 903; 54.4% identity (71.5% similar) in 274 aa overlap (1-259:1-264)

               10        20        30         40        50         
pF1KB7 MPRSFLVRKPSDPNRKPNYSELQDSNPEFTFQQPY-DQAHLLAAIPPPEILNPTASLPML
       :::::::.:  . ..::::::: :..   .. .::  ... . .:: ::::.  :  :. 
CCDS61 MPRSFLVKKHFNASKKPNYSEL-DTHT--VIISPYLYESYSMPVIPQPEILSSGAYSPIT
               10        20           30        40        50       

      60        70         80          90       100       110      
pF1KB7 IWDSVLAPQAQ-PIAWASLRLQESP--RVAELTSLSDEDSGKGSQPPSPPSPAPSSFSS-
       .: ..   .:: : . . :    :   ::.     :: .:   :   :: :     ..: 
CCDS61 VWTTAAPFHAQLPNGLSPLSGYSSSLGRVSP-PPPSDTSSKDHSGSESPISDEEERLQSK
        60        70        80         90       100       110      

          120                130       140       150       160     
pF1KB7 -TSVSSLEAE---------AYAAFPGLGQVPKQLAQLSEAKDLQARKAFNCKYCNKEYLS
        ..  ..:::         .:..: ::..  :::       : :.::.:.::::.:::.:
CCDS61 LSDPHAIEAEKFQCNLCNKTYSTFSGLAK-HKQLH-----CDAQSRKSFSCKYCDKEYVS
        120       130       140        150            160       170

         170       180       190       200       210       220     
pF1KB7 LGALKMHIRSHTLPCVCGTCGKAFSRPWLLQGHVRTHTGEKPFSCPHCSRAFADRSNLRA
       :::::::::.:::::::  ::::::::::::::.::::::::::::::.:::::::::::
CCDS61 LGALKMHIRTHTLPCVCKICGKAFSRPWLLQGHIRTHTGEKPFSCPHCNRAFADRSNLRA
              180       190       200       210       220       230

         230       240       250       260    
pF1KB7 HLQTHSDVKKYQCQACARTFSRMSLLHKHQESGCSGCPR
       :::::::::::::. :..:::::::::::.::::     
CCDS61 HLQTHSDVKKYQCKNCSKTFSRMSLLHKHEESGCCVAH 
              240       250       260         

>>CCDS32505.1 SNAI3 gene_id:333929|Hs108|chr16            (292 aa)
 initn: 746 init1: 678 opt: 687  Z-score: 483.4  bits: 97.3 E(32554): 1.3e-20
Smith-Waterman score: 713; 46.1% identity (67.7% similar) in 297 aa overlap (1-263:1-290)

               10        20        30        40        50          
pF1KB7 MPRSFLVRKPSDPNRKPNYSELQDSNPEFTFQQPYDQAHLLAAIPPPEILNPTA--SLPM
       :::::::.  :. .: ::: .:. .. :..       . :.. . : .   :..  .::.
CCDS32 MPRSFLVKTHSS-HRVPNYRRLE-TQREIN-GACSACGGLVVPLLPRDKEAPSVPGDLPQ
               10         20          30        40        50       

       60                 70            80         90        100   
pF1KB7 LIWD--SVLA-------PQAQPIAWAS----LRLQE-SPRVAELTSLSDEDS-GKGSQPP
         ::  :..:       :. .    ::    :...: .::... . .  .:: .. . ::
CCDS32 -PWDRSSAVACISLPLLPRIEEALGASGLDALEVSEVDPRASRAAIVPLKDSLNHLNLPP
         60        70        80        90       100       110      

                  110       120       130             140          
pF1KB7 S---P----PSPAPSSFSSTSVSSLEAEAYAAFPGLGQV-----PKQ-LAQLSEAKDL--
           :    :. .:.  ..   . : :: .   ::  .      : . :: :.. ..:  
CCDS32 LLVLPTRWSPTLGPDRHGAPE-KLLGAERMPRAPGGFECFHCHKPYHTLAGLARHRQLHC
        120       130        140       150       160       170     

        150       160       170       180       190       200      
pF1KB7 --QARKAFNCKYCNKEYLSLGALKMHIRSHTLPCVCGTCGKAFSRPWLLQGHVRTHTGEK
         :. ..:.::::.::: ::::::::::.:::::.:  ::::::::::::::::::::::
CCDS32 HLQVGRVFTCKYCDKEYTSLGALKMHIRTHTLPCTCKICGKAFSRPWLLQGHVRTHTGEK
         180       190       200       210       220       230     

        210       220       230       240       250       260     
pF1KB7 PFSCPHCSRAFADRSNLRAHLQTHSDVKKYQCQACARTFSRMSLLHKHQESGCSGCPR 
       :..: :::::::::::::::::::::.:::.:. :..:::::::: .:.::::  ::  
CCDS32 PYACSHCSRAFADRSNLRAHLQTHSDAKKYRCRRCTKTFSRMSLLARHEESGC--CPGP
         240       250       260       270       280         290  

>>CCDS13006.1 SCRT2 gene_id:85508|Hs108|chr20             (307 aa)
 initn: 669 init1: 467 opt: 519  Z-score: 370.0  bits: 76.3 E(32554): 2.7e-14
Smith-Waterman score: 519; 58.3% identity (82.6% similar) in 115 aa overlap (146-260:178-292)

         120       130       140       150       160       170     
pF1KB7 TSVSSLEAEAYAAFPGLGQVPKQLAQLSEAKDLQARKAFNCKYCNKEYLSLGALKMHIRS
                                     ..:... : .:  :.: :.:. :: ::. .
CCDS13 QAGGGHRHACAECGKTYATSSNLSRHKQTHRSLDSQLARKCPTCGKAYVSMPALAMHLLT
       150       160       170       180       190       200       

         180       190       200       210       220       230     
pF1KB7 HTLPCVCGTCGKAFSRPWLLQGHVRTHTGEKPFSCPHCSRAFADRSNLRAHLQTHSDVKK
       :.:   ::.::::::::::::::.:.:::::::.: ::..:::::::::::.::::  :.
CCDS13 HNLRHKCGVCGKAFSRPWLLQGHMRSHTGEKPFGCAHCGKAFADRSNLRAHMQTHSAFKH
       210       220       230       240       250       260       

         240       250       260               
pF1KB7 YQCQACARTFSRMSLLHKHQESGCSGCPR           
       :.:. : ..:.  : :::: :..:.               
CCDS13 YRCRQCDKSFALKSYLHKHCEAACAKAAEPPPPTPAGPAS
       270       280       290       300       

>>CCDS6421.1 SCRT1 gene_id:83482|Hs108|chr8               (348 aa)
 initn: 704 init1: 456 opt: 512  Z-score: 364.5  bits: 75.5 E(32554): 5.5e-14
Smith-Waterman score: 512; 57.9% identity (80.7% similar) in 114 aa overlap (146-259:214-327)

         120       130       140       150       160       170     
pF1KB7 TSVSSLEAEAYAAFPGLGQVPKQLAQLSEAKDLQARKAFNCKYCNKEYLSLGALKMHIRS
                                     ..:... :  :  :.: :.:. :. ::. .
CCDS64 AAGAGGRHACGECGKTYATSSNLSRHKQTHRSLDSQLARRCPTCGKVYVSMPAMAMHLLT
           190       200       210       220       230       240   

         180       190       200       210       220       230     
pF1KB7 HTLPCVCGTCGKAFSRPWLLQGHVRTHTGEKPFSCPHCSRAFADRSNLRAHLQTHSDVKK
       : :   ::.::::::::::::::.:.:::::::.: ::..:::::::::::.::::  :.
CCDS64 HDLRHKCGVCGKAFSRPWLLQGHMRSHTGEKPFGCAHCGKAFADRSNLRAHMQTHSAFKH
           250       260       270       280       290       300   

         240       250       260                    
pF1KB7 YQCQACARTFSRMSLLHKHQESGCSGCPR                
       .::. : ..:.  : :.:: ::.:                     
CCDS64 FQCKRCKKSFALKSYLNKHYESACFKGGAGGPAAPAPPQLSPVQA
           310       320       330       340        




264 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 08:37:20 2016 done: Fri Nov  4 08:37:20 2016
 Total Scan time:  2.930 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]