Result of FASTA (omim) for
pF1KB7546
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7546, 264 aa
1>>>pF1KB7546 264 - 264 aa - 264 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.3255+/-0.000325; mu= 4.2627+/- 0.020
mean_var=310.5079+/-67.514, 0's: 0 Z-trim(124.6): 1576 B-trim: 2392 in 1/60
Lambda= 0.072784
statistics sampled from 44549 (46717) to 44549 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.84), E-opt: 0.2 (0.548), width: 16
Scan time: 8.640
The best scores are: opt bits E(85289)
NP_005976 (OMIM: 604238) zinc finger protein SNAI1 ( 264) 1843 206.0 5.8e-53
NP_003059 (OMIM: 172800,602150,608890) zinc finger ( 268) 903 107.3 3e-23
NP_840101 (OMIM: 612741) zinc finger protein SNAI3 ( 292) 687 84.7 2.1e-16
NP_112599 (OMIM: 605858) transcriptional repressor ( 348) 512 66.4 8.1e-11
NP_003442 (OMIM: 601276) zinc finger protein 177 i ( 321) 356 50.0 6.6e-06
NP_001166122 (OMIM: 601276) zinc finger protein 17 ( 481) 356 50.2 8.4e-06
NP_001304919 (OMIM: 605878) zinc finger and BTB do ( 584) 350 49.7 1.5e-05
XP_005259628 (OMIM: 605878) PREDICTED: zinc finger ( 584) 350 49.7 1.5e-05
NP_056982 (OMIM: 605878) zinc finger and BTB domai ( 584) 350 49.7 1.5e-05
XP_005259627 (OMIM: 605878) PREDICTED: zinc finger ( 634) 350 49.7 1.5e-05
XP_016882570 (OMIM: 194551) PREDICTED: zinc finger ( 365) 344 48.8 1.7e-05
XP_016882571 (OMIM: 194551) PREDICTED: zinc finger ( 365) 344 48.8 1.7e-05
NP_067040 (OMIM: 194551) zinc finger protein 77 [H ( 545) 344 49.0 2.2e-05
NP_001171680 (OMIM: 616454,616468,616469) zinc fin ( 712) 346 49.4 2.2e-05
NP_079017 (OMIM: 616454,616468,616469) zinc finger ( 720) 346 49.4 2.2e-05
NP_001295198 (OMIM: 194628) zinc finger protein 12 ( 390) 338 48.2 2.8e-05
XP_016882728 (OMIM: 194628) PREDICTED: zinc finger ( 390) 338 48.2 2.8e-05
NP_001008727 (OMIM: 194628) zinc finger protein 12 ( 390) 338 48.2 2.8e-05
XP_005272399 (OMIM: 601262) PREDICTED: zinc finger ( 542) 338 48.4 3.4e-05
XP_016882236 (OMIM: 165260) PREDICTED: zinc finger ( 327) 333 47.6 3.6e-05
XP_011525220 (OMIM: 165260) PREDICTED: zinc finger ( 327) 333 47.6 3.6e-05
XP_011526674 (OMIM: 611811) PREDICTED: zinc finger ( 434) 335 47.9 3.7e-05
XP_005272398 (OMIM: 601262) PREDICTED: zinc finger ( 682) 338 48.5 3.9e-05
NP_001025147 (OMIM: 601262) zinc finger protein 16 ( 682) 338 48.5 3.9e-05
XP_011515600 (OMIM: 601262) PREDICTED: zinc finger ( 682) 338 48.5 3.9e-05
NP_008889 (OMIM: 601262) zinc finger protein 16 [H ( 682) 338 48.5 3.9e-05
XP_011526673 (OMIM: 611811) PREDICTED: zinc finger ( 476) 335 48.0 3.9e-05
XP_016881657 (OMIM: 604751) PREDICTED: zinc finger ( 319) 331 47.3 4.1e-05
XP_016881658 (OMIM: 604751) PREDICTED: zinc finger ( 319) 331 47.3 4.1e-05
XP_016881661 (OMIM: 604751) PREDICTED: zinc finger ( 319) 331 47.3 4.1e-05
XP_016881660 (OMIM: 604751) PREDICTED: zinc finger ( 319) 331 47.3 4.1e-05
XP_016881659 (OMIM: 604751) PREDICTED: zinc finger ( 319) 331 47.3 4.1e-05
XP_016882860 (OMIM: 611811) PREDICTED: zinc finger ( 519) 335 48.0 4.1e-05
XP_011526665 (OMIM: 611811) PREDICTED: zinc finger ( 556) 335 48.1 4.2e-05
XP_011526668 (OMIM: 611811) PREDICTED: zinc finger ( 556) 335 48.1 4.2e-05
XP_011526670 (OMIM: 611811) PREDICTED: zinc finger ( 556) 335 48.1 4.2e-05
XP_016882858 (OMIM: 611811) PREDICTED: zinc finger ( 556) 335 48.1 4.2e-05
XP_011526671 (OMIM: 611811) PREDICTED: zinc finger ( 556) 335 48.1 4.2e-05
XP_016882859 (OMIM: 611811) PREDICTED: zinc finger ( 556) 335 48.1 4.2e-05
XP_005260155 (OMIM: 611811) PREDICTED: zinc finger ( 556) 335 48.1 4.2e-05
XP_011526669 (OMIM: 611811) PREDICTED: zinc finger ( 556) 335 48.1 4.2e-05
XP_011526667 (OMIM: 611811) PREDICTED: zinc finger ( 556) 335 48.1 4.2e-05
XP_016882857 (OMIM: 611811) PREDICTED: zinc finger ( 578) 335 48.1 4.3e-05
XP_016882569 (OMIM: 194545) PREDICTED: endothelial ( 489) 333 47.8 4.5e-05
NP_067039 (OMIM: 194545) endothelial zinc finger p ( 489) 333 47.8 4.5e-05
XP_011525219 (OMIM: 165260) PREDICTED: zinc finger ( 491) 333 47.8 4.6e-05
NP_001308045 (OMIM: 165260) zinc finger and SCAN d ( 491) 333 47.8 4.6e-05
XP_006723255 (OMIM: 165260) PREDICTED: zinc finger ( 491) 333 47.8 4.6e-05
NP_862829 (OMIM: 165260) zinc finger and SCAN doma ( 491) 333 47.8 4.6e-05
NP_597715 (OMIM: 609451) zinc finger protein 90 ho ( 636) 335 48.1 4.6e-05
>>NP_005976 (OMIM: 604238) zinc finger protein SNAI1 [Ho (264 aa)
initn: 1843 init1: 1843 opt: 1843 Z-score: 1071.8 bits: 206.0 E(85289): 5.8e-53
Smith-Waterman score: 1843; 100.0% identity (100.0% similar) in 264 aa overlap (1-264:1-264)
10 20 30 40 50 60
pF1KB7 MPRSFLVRKPSDPNRKPNYSELQDSNPEFTFQQPYDQAHLLAAIPPPEILNPTASLPMLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MPRSFLVRKPSDPNRKPNYSELQDSNPEFTFQQPYDQAHLLAAIPPPEILNPTASLPMLI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 WDSVLAPQAQPIAWASLRLQESPRVAELTSLSDEDSGKGSQPPSPPSPAPSSFSSTSVSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 WDSVLAPQAQPIAWASLRLQESPRVAELTSLSDEDSGKGSQPPSPPSPAPSSFSSTSVSS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 LEAEAYAAFPGLGQVPKQLAQLSEAKDLQARKAFNCKYCNKEYLSLGALKMHIRSHTLPC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 LEAEAYAAFPGLGQVPKQLAQLSEAKDLQARKAFNCKYCNKEYLSLGALKMHIRSHTLPC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 VCGTCGKAFSRPWLLQGHVRTHTGEKPFSCPHCSRAFADRSNLRAHLQTHSDVKKYQCQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 VCGTCGKAFSRPWLLQGHVRTHTGEKPFSCPHCSRAFADRSNLRAHLQTHSDVKKYQCQA
190 200 210 220 230 240
250 260
pF1KB7 CARTFSRMSLLHKHQESGCSGCPR
::::::::::::::::::::::::
NP_005 CARTFSRMSLLHKHQESGCSGCPR
250 260
>>NP_003059 (OMIM: 172800,602150,608890) zinc finger pro (268 aa)
initn: 921 init1: 745 opt: 903 Z-score: 538.3 bits: 107.3 E(85289): 3e-23
Smith-Waterman score: 903; 54.4% identity (71.5% similar) in 274 aa overlap (1-259:1-264)
10 20 30 40 50
pF1KB7 MPRSFLVRKPSDPNRKPNYSELQDSNPEFTFQQPY-DQAHLLAAIPPPEILNPTASLPML
:::::::.: . ..::::::: :.. .. .:: ... . .:: ::::. : :.
NP_003 MPRSFLVKKHFNASKKPNYSEL-DTHT--VIISPYLYESYSMPVIPQPEILSSGAYSPIT
10 20 30 40 50
60 70 80 90 100 110
pF1KB7 IWDSVLAPQAQ-PIAWASLRLQESP--RVAELTSLSDEDSGKGSQPPSPPSPAPSSFSS-
.: .. .:: : . . : : ::. :: .: : :: : ..:
NP_003 VWTTAAPFHAQLPNGLSPLSGYSSSLGRVSP-PPPSDTSSKDHSGSESPISDEEERLQSK
60 70 80 90 100 110
120 130 140 150 160
pF1KB7 -TSVSSLEAE---------AYAAFPGLGQVPKQLAQLSEAKDLQARKAFNCKYCNKEYLS
.. ..::: .:..: ::.. ::: : :.::.:.::::.:::.:
NP_003 LSDPHAIEAEKFQCNLCNKTYSTFSGLAK-HKQLH-----CDAQSRKSFSCKYCDKEYVS
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB7 LGALKMHIRSHTLPCVCGTCGKAFSRPWLLQGHVRTHTGEKPFSCPHCSRAFADRSNLRA
:::::::::.::::::: ::::::::::::::.::::::::::::::.:::::::::::
NP_003 LGALKMHIRTHTLPCVCKICGKAFSRPWLLQGHIRTHTGEKPFSCPHCNRAFADRSNLRA
180 190 200 210 220 230
230 240 250 260
pF1KB7 HLQTHSDVKKYQCQACARTFSRMSLLHKHQESGCSGCPR
:::::::::::::. :..:::::::::::.::::
NP_003 HLQTHSDVKKYQCKNCSKTFSRMSLLHKHEESGCCVAH
240 250 260
>>NP_840101 (OMIM: 612741) zinc finger protein SNAI3 [Ho (292 aa)
initn: 746 init1: 678 opt: 687 Z-score: 415.3 bits: 84.7 E(85289): 2.1e-16
Smith-Waterman score: 713; 46.1% identity (67.7% similar) in 297 aa overlap (1-263:1-290)
10 20 30 40 50
pF1KB7 MPRSFLVRKPSDPNRKPNYSELQDSNPEFTFQQPYDQAHLLAAIPPPEILNPTA--SLPM
:::::::. :. .: ::: .:. .. :.. . :.. . : . :.. .::.
NP_840 MPRSFLVKTHSS-HRVPNYRRLE-TQREIN-GACSACGGLVVPLLPRDKEAPSVPGDLPQ
10 20 30 40 50
60 70 80 90 100
pF1KB7 LIWD--SVLA-------PQAQPIAWAS----LRLQE-SPRVAELTSLSDEDS-GKGSQPP
:: :..: :. . :: :...: .::... . . .:: .. . ::
NP_840 -PWDRSSAVACISLPLLPRIEEALGASGLDALEVSEVDPRASRAAIVPLKDSLNHLNLPP
60 70 80 90 100 110
110 120 130 140
pF1KB7 S---P----PSPAPSSFSSTSVSSLEAEAYAAFPGLGQV-----PKQ-LAQLSEAKDL--
: :. .:. .. . : :: . :: . : . :: :.. ..:
NP_840 LLVLPTRWSPTLGPDRHGAPE-KLLGAERMPRAPGGFECFHCHKPYHTLAGLARHRQLHC
120 130 140 150 160 170
150 160 170 180 190 200
pF1KB7 --QARKAFNCKYCNKEYLSLGALKMHIRSHTLPCVCGTCGKAFSRPWLLQGHVRTHTGEK
:. ..:.::::.::: ::::::::::.:::::.: ::::::::::::::::::::::
NP_840 HLQVGRVFTCKYCDKEYTSLGALKMHIRTHTLPCTCKICGKAFSRPWLLQGHVRTHTGEK
180 190 200 210 220 230
210 220 230 240 250 260
pF1KB7 PFSCPHCSRAFADRSNLRAHLQTHSDVKKYQCQACARTFSRMSLLHKHQESGCSGCPR
:..: :::::::::::::::::::::.:::.:. :..:::::::: .:.:::: ::
NP_840 PYACSHCSRAFADRSNLRAHLQTHSDAKKYRCRRCTKTFSRMSLLARHEESGC--CPGP
240 250 260 270 280 290
>>NP_112599 (OMIM: 605858) transcriptional repressor scr (348 aa)
initn: 704 init1: 456 opt: 512 Z-score: 315.2 bits: 66.4 E(85289): 8.1e-11
Smith-Waterman score: 512; 57.9% identity (80.7% similar) in 114 aa overlap (146-259:214-327)
120 130 140 150 160 170
pF1KB7 TSVSSLEAEAYAAFPGLGQVPKQLAQLSEAKDLQARKAFNCKYCNKEYLSLGALKMHIRS
..:... : : :.: :.:. :. ::. .
NP_112 AAGAGGRHACGECGKTYATSSNLSRHKQTHRSLDSQLARRCPTCGKVYVSMPAMAMHLLT
190 200 210 220 230 240
180 190 200 210 220 230
pF1KB7 HTLPCVCGTCGKAFSRPWLLQGHVRTHTGEKPFSCPHCSRAFADRSNLRAHLQTHSDVKK
: : ::.::::::::::::::.:.:::::::.: ::..:::::::::::.:::: :.
NP_112 HDLRHKCGVCGKAFSRPWLLQGHMRSHTGEKPFGCAHCGKAFADRSNLRAHMQTHSAFKH
250 260 270 280 290 300
240 250 260
pF1KB7 YQCQACARTFSRMSLLHKHQESGCSGCPR
.::. : ..:. : :.:: ::.:
NP_112 FQCKRCKKSFALKSYLNKHYESACFKGGAGGPAAPAPPQLSPVQA
310 320 330 340
>>NP_003442 (OMIM: 601276) zinc finger protein 177 isofo (321 aa)
initn: 491 init1: 271 opt: 356 Z-score: 227.0 bits: 50.0 E(85289): 6.6e-06
Smith-Waterman score: 356; 41.8% identity (66.4% similar) in 122 aa overlap (152-264:150-271)
130 140 150 160 170
pF1KB7 EAEAYAAFPGLGQVPKQLAQLSEAKDLQARKAFNCKYCNKEYLSLGALKMHIRSHT--LP
: ..: .:.: . . . :..: :.:: :
NP_003 GEMPYECSDCGKAFIFQSSLKKHMRSHTGEKPYECDHCGKSFSQSSHLNVHKRTHTGEKP
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB7 CVCGTCGKAFSRPWLLQGHVRTHTGEKPFSCPHCSRAFADRSNLRAHLQTHSDVKKYQCQ
: :::::. : :: ::::::::::. : :..:: :.:.:. : ..:. : :.:.
NP_003 YDCKECGKAFTVPSSLQKHVRTHTGEKPYECSDCGKAFIDQSSLKKHTRSHTGEKPYECN
180 190 200 210 220 230
240 250 260
pF1KB7 ACARTFSRMSLL--HKHQESG-----CSGCPR
:...:: : : ::. ..: :. : .
NP_003 QCGKSFSTGSYLIVHKRTHTGEKTYECKECGKAFRNSSCLRVHVRTHTGEKPYKCIQCEK
240 250 260 270 280 290
NP_003 AFSTSTNLIMHKRIHNGQKLHE
300 310 320
>>NP_001166122 (OMIM: 601276) zinc finger protein 177 is (481 aa)
initn: 830 init1: 271 opt: 356 Z-score: 225.1 bits: 50.2 E(85289): 8.4e-06
Smith-Waterman score: 356; 41.8% identity (66.4% similar) in 122 aa overlap (152-264:310-431)
130 140 150 160 170
pF1KB7 EAEAYAAFPGLGQVPKQLAQLSEAKDLQARKAFNCKYCNKEYLSLGALKMHIRSHT--LP
: ..: .:.: . . . :..: :.:: :
NP_001 GEMPYECSDCGKAFIFQSSLKKHMRSHTGEKPYECDHCGKSFSQSSHLNVHKRTHTGEKP
280 290 300 310 320 330
180 190 200 210 220 230
pF1KB7 CVCGTCGKAFSRPWLLQGHVRTHTGEKPFSCPHCSRAFADRSNLRAHLQTHSDVKKYQCQ
: :::::. : :: ::::::::::. : :..:: :.:.:. : ..:. : :.:.
NP_001 YDCKECGKAFTVPSSLQKHVRTHTGEKPYECSDCGKAFIDQSSLKKHTRSHTGEKPYECN
340 350 360 370 380 390
240 250 260
pF1KB7 ACARTFSRMSLL--HKHQESG-----CSGCPR
:...:: : : ::. ..: :. : .
NP_001 QCGKSFSTGSYLIVHKRTHTGEKTYECKECGKAFRNSSCLRVHVRTHTGEKPYKCIQCEK
400 410 420 430 440 450
NP_001 AFSTSTNLIMHKRIHNGQKLHE
460 470 480
>>NP_001304919 (OMIM: 605878) zinc finger and BTB domain (584 aa)
initn: 408 init1: 206 opt: 350 Z-score: 220.8 bits: 49.7 E(85289): 1.5e-05
Smith-Waterman score: 359; 30.0% identity (53.7% similar) in 283 aa overlap (10-263:222-494)
10 20 30
pF1KB7 MPRSFLVRKPSDPNRKPNYSELQ--DSNPEFTFQQPYDQ
:. : ..: .. . :::: . .. :
NP_001 DDDLDATKEAVAAAVAAVAAGDCNGLDFYGPGPPAERPPTGDGDEGDSNPGLWPERDED-
200 210 220 230 240 250
40 50 60 70 80 90
pF1KB7 AHLLAAIPPPEILNPTASLPMLIWDSVLAPQAQPIAWASLRLQESPRVAELTSLSDEDSG
: . .::: . : :. . .: .. :. . .:: . :.. .. ..:
NP_001 APTGGLFPPP--VAPPAATQNGHYGRGGEEEAASLSEAAPEPGDSP--GFLSGAAEGEDG
260 270 280 290 300
100 110 120 130
pF1KB7 KGSQPPSPPSPAPSSFSSTSVSSLEAEAYAA---------------------FPGL--GQ
: :. . : :.. . .::. . :: : : :.
NP_001 DG---PDVDGLAASTLLQQMMSSVGRAGAAAGDSDEESRADDKGVMDYYLKYFSGAHDGD
310 320 330 340 350 360
140 150 160 170 180 190
pF1KB7 VPKQLAQLSEAKDLQARKAFN-CKYCNKEYLSLGALKMHIRSHT--LPCVCGTCGKAFSR
: .: : : ..: :::. : :.: . : : :::.:: : :. : :.:
NP_001 VYPAWSQKVE-KKIRA-KAFQKCPICEKVIQGAGKLPRHIRTHTGEKPYECNICKVRFTR
370 380 390 400 410 420
200 210 220 230 240 250
pF1KB7 PWLLQGHVRTHTGEKPFSCPHCSRAFADRSNLRAHLQTHSDVKKYQCQACARTFSRMSLL
:. :.: ::::::. : .:. ::: .:. :...:. .. :::..: .:: : . :
NP_001 QDKLKVHMRKHTGEKPYLCQQCGAAFAHNYDLKNHMRVHTGLRPYQCDSCCKTFVRSDHL
430 440 450 460 470 480
260
pF1KB7 HKH-QESGCSGCPR
:.: ...::.: :
NP_001 HRHLKKDGCNGVPSRRGRKPRVRGGAPDPSPGATATPGAPAQPSSPDARRNGQEKHFKDE
490 500 510 520 530 540
>>XP_005259628 (OMIM: 605878) PREDICTED: zinc finger and (584 aa)
initn: 408 init1: 206 opt: 350 Z-score: 220.8 bits: 49.7 E(85289): 1.5e-05
Smith-Waterman score: 359; 30.0% identity (53.7% similar) in 283 aa overlap (10-263:222-494)
10 20 30
pF1KB7 MPRSFLVRKPSDPNRKPNYSELQ--DSNPEFTFQQPYDQ
:. : ..: .. . :::: . .. :
XP_005 DDDLDATKEAVAAAVAAVAAGDCNGLDFYGPGPPAERPPTGDGDEGDSNPGLWPERDED-
200 210 220 230 240 250
40 50 60 70 80 90
pF1KB7 AHLLAAIPPPEILNPTASLPMLIWDSVLAPQAQPIAWASLRLQESPRVAELTSLSDEDSG
: . .::: . : :. . .: .. :. . .:: . :.. .. ..:
XP_005 APTGGLFPPP--VAPPAATQNGHYGRGGEEEAASLSEAAPEPGDSP--GFLSGAAEGEDG
260 270 280 290 300
100 110 120 130
pF1KB7 KGSQPPSPPSPAPSSFSSTSVSSLEAEAYAA---------------------FPGL--GQ
: :. . : :.. . .::. . :: : : :.
XP_005 DG---PDVDGLAASTLLQQMMSSVGRAGAAAGDSDEESRADDKGVMDYYLKYFSGAHDGD
310 320 330 340 350 360
140 150 160 170 180 190
pF1KB7 VPKQLAQLSEAKDLQARKAFN-CKYCNKEYLSLGALKMHIRSHT--LPCVCGTCGKAFSR
: .: : : ..: :::. : :.: . : : :::.:: : :. : :.:
XP_005 VYPAWSQKVE-KKIRA-KAFQKCPICEKVIQGAGKLPRHIRTHTGEKPYECNICKVRFTR
370 380 390 400 410 420
200 210 220 230 240 250
pF1KB7 PWLLQGHVRTHTGEKPFSCPHCSRAFADRSNLRAHLQTHSDVKKYQCQACARTFSRMSLL
:. :.: ::::::. : .:. ::: .:. :...:. .. :::..: .:: : . :
XP_005 QDKLKVHMRKHTGEKPYLCQQCGAAFAHNYDLKNHMRVHTGLRPYQCDSCCKTFVRSDHL
430 440 450 460 470 480
260
pF1KB7 HKH-QESGCSGCPR
:.: ...::.: :
XP_005 HRHLKKDGCNGVPSRRGRKPRVRGGAPDPSPGATATPGAPAQPSSPDARRNGQEKHFKDE
490 500 510 520 530 540
>>NP_056982 (OMIM: 605878) zinc finger and BTB domain-co (584 aa)
initn: 408 init1: 206 opt: 350 Z-score: 220.8 bits: 49.7 E(85289): 1.5e-05
Smith-Waterman score: 359; 30.0% identity (53.7% similar) in 283 aa overlap (10-263:222-494)
10 20 30
pF1KB7 MPRSFLVRKPSDPNRKPNYSELQ--DSNPEFTFQQPYDQ
:. : ..: .. . :::: . .. :
NP_056 DDDLDATKEAVAAAVAAVAAGDCNGLDFYGPGPPAERPPTGDGDEGDSNPGLWPERDED-
200 210 220 230 240 250
40 50 60 70 80 90
pF1KB7 AHLLAAIPPPEILNPTASLPMLIWDSVLAPQAQPIAWASLRLQESPRVAELTSLSDEDSG
: . .::: . : :. . .: .. :. . .:: . :.. .. ..:
NP_056 APTGGLFPPP--VAPPAATQNGHYGRGGEEEAASLSEAAPEPGDSP--GFLSGAAEGEDG
260 270 280 290 300
100 110 120 130
pF1KB7 KGSQPPSPPSPAPSSFSSTSVSSLEAEAYAA---------------------FPGL--GQ
: :. . : :.. . .::. . :: : : :.
NP_056 DG---PDVDGLAASTLLQQMMSSVGRAGAAAGDSDEESRADDKGVMDYYLKYFSGAHDGD
310 320 330 340 350 360
140 150 160 170 180 190
pF1KB7 VPKQLAQLSEAKDLQARKAFN-CKYCNKEYLSLGALKMHIRSHT--LPCVCGTCGKAFSR
: .: : : ..: :::. : :.: . : : :::.:: : :. : :.:
NP_056 VYPAWSQKVE-KKIRA-KAFQKCPICEKVIQGAGKLPRHIRTHTGEKPYECNICKVRFTR
370 380 390 400 410 420
200 210 220 230 240 250
pF1KB7 PWLLQGHVRTHTGEKPFSCPHCSRAFADRSNLRAHLQTHSDVKKYQCQACARTFSRMSLL
:. :.: ::::::. : .:. ::: .:. :...:. .. :::..: .:: : . :
NP_056 QDKLKVHMRKHTGEKPYLCQQCGAAFAHNYDLKNHMRVHTGLRPYQCDSCCKTFVRSDHL
430 440 450 460 470 480
260
pF1KB7 HKH-QESGCSGCPR
:.: ...::.: :
NP_056 HRHLKKDGCNGVPSRRGRKPRVRGGAPDPSPGATATPGAPAQPSSPDARRNGQEKHFKDE
490 500 510 520 530 540
>>XP_005259627 (OMIM: 605878) PREDICTED: zinc finger and (634 aa)
initn: 387 init1: 206 opt: 350 Z-score: 220.4 bits: 49.7 E(85289): 1.5e-05
Smith-Waterman score: 359; 30.0% identity (53.7% similar) in 283 aa overlap (10-263:272-544)
10 20 30
pF1KB7 MPRSFLVRKPSDPNRKPNYSELQ--DSNPEFTFQQPYDQ
:. : ..: .. . :::: . .. :
XP_005 DDDLDATKEAVAAAVAAVAAGDCNGLDFYGPGPPAERPPTGDGDEGDSNPGLWPERDED-
250 260 270 280 290 300
40 50 60 70 80 90
pF1KB7 AHLLAAIPPPEILNPTASLPMLIWDSVLAPQAQPIAWASLRLQESPRVAELTSLSDEDSG
: . .::: . : :. . .: .. :. . .:: . :.. .. ..:
XP_005 APTGGLFPPP--VAPPAATQNGHYGRGGEEEAASLSEAAPEPGDSP--GFLSGAAEGEDG
310 320 330 340 350
100 110 120 130
pF1KB7 KGSQPPSPPSPAPSSFSSTSVSSLEAEAYAA---------------------FPGL--GQ
: :. . : :.. . .::. . :: : : :.
XP_005 DG---PDVDGLAASTLLQQMMSSVGRAGAAAGDSDEESRADDKGVMDYYLKYFSGAHDGD
360 370 380 390 400 410
140 150 160 170 180 190
pF1KB7 VPKQLAQLSEAKDLQARKAFN-CKYCNKEYLSLGALKMHIRSHT--LPCVCGTCGKAFSR
: .: : : ..: :::. : :.: . : : :::.:: : :. : :.:
XP_005 VYPAWSQKVE-KKIRA-KAFQKCPICEKVIQGAGKLPRHIRTHTGEKPYECNICKVRFTR
420 430 440 450 460 470
200 210 220 230 240 250
pF1KB7 PWLLQGHVRTHTGEKPFSCPHCSRAFADRSNLRAHLQTHSDVKKYQCQACARTFSRMSLL
:. :.: ::::::. : .:. ::: .:. :...:. .. :::..: .:: : . :
XP_005 QDKLKVHMRKHTGEKPYLCQQCGAAFAHNYDLKNHMRVHTGLRPYQCDSCCKTFVRSDHL
480 490 500 510 520 530
260
pF1KB7 HKH-QESGCSGCPR
:.: ...::.: :
XP_005 HRHLKKDGCNGVPSRRGRKPRVRGGAPDPSPGATATPGAPAQPSSPDARRNGQEKHFKDE
540 550 560 570 580 590
264 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 08:37:21 2016 done: Fri Nov 4 08:37:22 2016
Total Scan time: 8.640 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]