FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7547, 185 aa
  1>>>pF1KB7547 185 - 185 aa - 185 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8333+/-0.000699; mu= 11.2943+/- 0.042
 mean_var=103.6069+/-22.390, 0's: 0 Z-trim(111.7): 196  B-trim: 696 in 1/52
 Lambda= 0.126003
 statistics sampled from 12391 (12629) to 12391 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.767), E-opt: 0.2 (0.388), width:  16
 Scan time:  2.100

The best scores are:                                      opt bits E(32554)
CCDS2881.1 HESX1 gene_id:8820|Hs108|chr3           ( 185) 1273 241.1   3e-64


>>CCDS2881.1 HESX1 gene_id:8820|Hs108|chr3                (185 aa)
 initn: 1273 init1: 1273 opt: 1273  Z-score: 1267.0  bits: 241.1 E(32554): 3e-64
Smith-Waterman score: 1273; 100.0% identity (100.0% similar) in 185 aa overlap (1-185:1-185)

               10        20        30        40        50        60
pF1KB7 MSPSLQEGAQLGENKPSTCSFSIERILGLDQKKDCVPLMKPHRPWADTCSSSGKDGNLCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 MSPSLQEGAQLGENKPSTCSFSIERILGLDQKKDCVPLMKPHRPWADTCSSSGKDGNLCL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 HVPNPPSGISFPSVVDHPMPEERASKYENYFSASERLSLKRELSWYRGRRPRTAFTQNQI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 HVPNPPSGISFPSVVDHPMPEERASKYENYFSASERLSLKRELSWYRGRRPRTAFTQNQI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 EVLENVFRVNCYPGIDIREDLAQKLNLEEDRIQIWFQNRRAKLKRSHRESQFLMAKKNFN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 EVLENVFRVNCYPGIDIREDLAQKLNLEEDRIQIWFQNRRAKLKRSHRESQFLMAKKNFN
              130       140       150       160       170       180

            
pF1KB7 TNLLE
       :::::
CCDS28 TNLLE
            




185 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 18:07:37 2016 done: Sat Nov  5 18:07:38 2016
 Total Scan time:  2.100 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]